ncbi/ncbi-vdb

Issues

• Some builtins that vdb uses are gcc-specific and don't compile with clang.

  #18 opened 4 months ago by yurivict
  1

• Error encountered while compiling for Arm platform

  #72 opened 4 months ago by hyacz
  2

• Enable Apple Silicon builds by adding `interfaces/cc/clang/aarch64`

  #65 opened 4 months ago by cho-m
  2

• Request: i386 support

  #146 opened 5 months ago by ning-y
  3

• HTTP 405 status on HEAD requests

  #143 opened 6 months ago by IbrahimTanyalcin
  3

• The gethostbyname*() and gethostbyaddr*() functions are deprecated as among other things they are not IPv6 ready

  #98 opened 2 years ago by V-Z
  1

• Reduce maximum memory usage while reading SRA data?

  #97 opened 2 years ago by jgans
  2

• error: too few arguments to function ‘H5Oget_info_by_name3’

  #78 opened 2 years ago by mmahmoudian
  1

• Encountered problems with GCC

  #82 opened 2 years ago by HuangseYuanli
  1

• Construction method of arm platform

  #71 opened 2 years ago by HuangseYuanli
  0

• modify the compiler

  #73 opened 2 years ago by HuangseYuanli
  3

• When compiling SRA Tools & NCBI VDB in fedora36 environment, HDF5 static library or shared library file cannot be found

  #76 opened 2 years ago by HuangseYuanli
  1

• bitcpy

  #70 opened 2 years ago by HuangseYuanli
  1

• undefined reference to `__stack_chk_guard' when configuring IgBlast

  #41 opened 2 years ago by schristley
  1

• -bash: vdb-config: command not found

  #51 opened 2 years ago by akjr123
  2

• Is there a way to force the release of the VDB memory cache with C++ SDK?

  #60 opened 2 years ago by jgans
  2

• Built target Test_KNS_proxy-with-scheme_failure

  #63 opened 2 years ago by sramani-spark
  1

• Unable to stream SRR12596531 but can read from local disk

  #58 opened 2 years ago by jgans
  4

• Build system doesn't find cmake3 on CentOS 7

  #52 opened 3 years ago by alanorth
  2

• Reference Workflow for Fastq->SRA File (VDB Conversion)

  #44 opened 3 years ago by LRParser
  2

• build issues with gcc 10.3.0 on Linux/x86-64

  #43 opened 3 years ago by drhpc
  3

• VCursorCellDataDirect returns a zero length read ... but shouldn't?

  #24 opened 3 years ago by jgans
  5

• Parallel use of prefetch of SRA files from AWS S3 leads to NCBI abuse message & blocking?

  #28 opened 3 years ago by taltman
  42

• Installs static libs instead of shared libs, for example lib/libncbi-vdb.a.2.11.0

  #36 opened 3 years ago by yurivict
  5

• fatal error: 'ext/mbedtls/base64.h' file not found

  #35 opened 3 years ago by yurivict
  1

• ktst test failure

  #34 opened 4 years ago by prehensilecode
  6

• Memory leak in ngs::ReadCollection and/or ncbi::NGS::openReadCollection when streaming SRA records?

  #32 opened 4 years ago by jgans
  3

• hdf5 not recognized on Arch

  #22 opened 4 years ago by MatthewRalston
  4

• Benchmarking parallel SRA downloads using prefetch on AWS

  #30 opened 4 years ago by jgans
  1

• Can't find hdf5 after apt-get installation

  #19 opened 4 years ago by Pallieguy
  6

• Install can't find libxml2

  #27 opened 4 years ago by bredelings
  3

• Build from source errors

  #33 opened 4 years ago by CiaranWelsh
  1

• Extreme memory consumption when reading certain SRA records?

  #31 opened 4 years ago by jgans
  11

• Uneven reading time within a SRA file

  #29 opened 4 years ago by jgans
  1

• Test for root in make install

  #17 opened 4 years ago by sachalau
  6

• /kns/http-file.c:1275:19: warning: this 'else' clause does not guard... [-Wmisleading-indentation]

  #26 opened 4 years ago by smoe
  2

• VDBManagerPathType() returns kptNotFound under stress

  #25 opened 4 years ago by jgans
  0

• error: pshufb is not supported on generic64.aes

  #14 opened 8 years ago by yangming
  9

• Static declaration of gettid follows non-static declaration

  #21 opened 5 years ago by MatthewRalston
  4

• Error: `pshufb' is not supported on `generic64.aes'

  #6 opened 8 years ago by tseemann
  11

• Please remove explicit -m32/-m64 switch

  #8 opened 5 years ago by tillea
  7

• installation does not include files required by sra-tools

  #3 opened 5 years ago by rekado
  2

• make -j4 fails

  #16 opened 7 years ago by sjackman
  2

• `with-vdb explicitly specified, but not supported on this platform` error

  #15 opened 7 years ago by trappedinspacetime
  1

• Any documentation?

  #5 opened 7 years ago by eiva
  1

• Change to 2.8.1 release tag / checksum error?

  #13 opened 8 years ago by cmdcolin
  2

• Installed ncbi-vdb package cannot be found by sratools

  #10 opened 8 years ago by vradore
  6

• make install error: KFG lib not compiling

  #11 opened 8 years ago by ababaian
  4

• libs/search requires -msse2 switch

  #7 opened 8 years ago by tillea
  0

• "prefetch -t http ..." produces empty files

  #4 opened 9 years ago by epruesse
  5