qys2007

qys2007's Stars

• docker/awesome-compose

  Awesome Docker Compose samples

  Language:HTML36.7k4511216.9k

• ramnathv/slidify

  Generate reproducible html5 slides from R markdown

  Language:R84474505338

• crazyhottommy/scRNAseq-analysis-notes

  scRNAseq analysis notes from Ming Tang

  663460162

• cellgeni/sceasy

  A package to help convert different single-cell data formats to each other

  Language:R39887758

• const-ae/ggupset

  Combination matrix axis for 'ggplot2' to create 'UpSet' plots

  Language:R35473725

• NVIDIA-Genomics-Research/rapids-single-cell-examples

  Examples of single-cell genomic analysis accelerated with RAPIDS

  Language:Jupyter Notebook329173469

• rstudio/thematic

  Theme ggplot2, lattice, and base graphics based on a few simple settings.

  Language:R244149310

• im3sanger/dndscv

  dN/dS methods to quantify selection in cancer and somatic evolution

  Language:HTML216139648

• czbiohub-sf/scell_lung_adenocarcinoma

  This is the repository that contains the analysis of the lung adenocarcinoma single cell dataset

  Language:HTML1459492

• PharmGKB/PharmCAT

  The Pharmacogenomic Clinical Annotation Tool

  Language:Java1243118040

• satijalab/azimuth

  A Shiny web app for mapping datasets using Seurat v4

  Language:HTML119917834

• genome/analysis-workflows

  Open workflow definitions for genomic analysis from MGI at WUSM.

  Language:Common Workflow Language1022630658

• niu-lab/msisensor2

  Microsatellite instability (MSI) detection for tumor only data.

  Language:R97104821

• calico/solo

  software to detect doublets

  Language:Python8785713

• AllonMKlein/scrublet

  Detect doublets in single-cell RNA-seq data

  Language:Jupyter Notebook8514026

• getzlab/SignatureAnalyzer

  Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.

  Language:Python74103721

• datacarpentry/wrangling-genomics

  Data Wrangling and Processing for Genomics

  Language:Shell7224123152

• lilab-bcb/cumulus

  Cloud-based scalable and efficient single-cell genomics workflows

  Language:WDL5865030

• EI-CoreBioinformatics/portcullis

  Splice junction analysis and filtering from BAM files

  Language:C++394659

• oliviergimenez/reproducible-science

  material for teaching reproducible science with R and RStudio

  30503

• AstraZeneca-NGS/disambiguate

  Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem

  Language:C++29301615

• openvax/topiary

  Predict mutated T-cell epitopes from sequencing data

  Language:Python2714579

• mikelove/deseq2_or_edger

  DESeq2 or edgeR

  Language:R22407

• WGLab/Workshop_Annotation

  Course materials for "Variants Annotate and Phenotype Analysis"

  221304

• sunway1999/deep_omics

  Repository for Short Course: Deep Learning in Omics

  Language:HTML17305

• Pfern/PANGenomics

  15814

• biomedicalinformaticsgroup/Sargasso

  Sargasso disambiguates mixed-species high-throughput sequencing data.

  Language:Python85994

• yaroslavshtogun/Intorduction-to-Python-and-Data-Science

  Language:Jupyter Notebook63

• tanaylab/li_et_al_cell_2018_melanoma_scrna

  Language:R5511

• g3chen/rsem

  Wrapper workflow and Decider for RSEM tool (transcription analysis for RNAseq)

  Language:wdl1