roomfortwo

roomfortwo's Stars

• rust-bio/rust-bio

  This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

  Language:Rust1.6k71198206

• malonge/RagTag

  Tools for fast and flexible genome assembly scaffolding and improvement

  Language:Python470818748

• TGAC/KAT

  The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.

  Language:C++2062316352

• DRL/blobtools

  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

  Language:Python191910344

• mikolmogorov/Ragout

  Chromosome-level scaffolding using multiple references

  Language:Python156168327

• linzhi2013/MitoZ

  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes

  Language:Shell1151221939

• CompSynBioLab-KoreaUniv/FunGAP

  FunGAP: fungal Genome Annotation Pipeline

  Language:Python10968533

• tbenavi1/genomescope2.0

  Reference-free profiling of polyploid genomes

  Language:R1025018

• roblanf/sangeranalyseR

  functions to analyse sanger sequencing reads in R

  Language:R9779124

• iprada/Circle-Map

  A method for circular DNA detection based on probabilistic mapping of ultrashort reads

  Language:Python6268319

• biocore/songbird

  Vanilla regression methods for microbiome differential abundance analysis

  Language:Python59911425

• nsoranzo/sspace_basic

  SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension

  Language:Perl456016

• sestaton/Transposome

  A toolkit for annotation of transposable element families from unassembled sequence reads

  Language:Perl316456

• lpryszcz/pyScaf

  Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.

  Language:Python2461111

• wushyer/RGAAT_v2

  Add multiple thread function for genome comparison

  Language:Perl15066

• micom-dev/q2-micom

  A Qiime plugin for MICOM.

  Language:Python103224

• amarinderthind/decontaminer

  DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further investigation and experimental validation. The novelty of DecontaMiner is mainly represented by its easy integration with the standard procedures of NGS data analysis, while providing a complete, reliable, and automatic pipeline. https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2684-x

  Language:Perl9370

• Lafond-LapalmeJ/MCSC_Decontamination

  Scripts and documentations on the MCSC decontamination method

  Language:Perl9482

• sam-k/seq-quality-trimming

  Trimming Sanger sequencing reads by quality

  Language:Python5100

• michaelsilverstein/mineer

  A sensible sequence trimming algorithm

  Language:Python32220

• stephschustermann/piRNA-detection

  piRNA detection via multidimensional small RNA clustering

  Language:Python2200