sjessa

sjessa's Stars

• python-poetry/poetry

  Python packaging and dependency management made easy

  Language:Python32.2k1916k2.3k

• kenjihiranabe/The-Art-of-Linear-Algebra

  Graphic notes on Gilbert Strang's "Linear Algebra for Everyone"

  Language:PostScript18.3k148142.2k

• omnivore-app/omnivore

  Omnivore is a complete, open source read-it-later solution for people who like reading.

  Language:TypeScript14.2k591.3k1.1k

• rmcelreath/stat_rethinking_2023

  Statistical Rethinking Course for Jan-Mar 2023

  Language:R2.2k15115250

• sokrypton/ColabFold

  Making Protein folding accessible to all!

  Language:Jupyter Notebook2.1k48566508

• spotify/voyager

  🛰️ An approximate nearest-neighbor search library for Python and Java with a focus on ease of use, simplicity, and deployability.

  Language:C++1.4k133359

• moshi4/pyCirclize

  Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

  Language:Python798104550

• OmicsML/awesome-deep-learning-single-cell-papers

  71331592

• ncase/nutshell

  Make expandable explanations!

  Language:JavaScript52571632

• pachterlab/BI-BE-CS-183-2023

  Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023

  Language:Jupyter Notebook4619372

• chris-mcginnis-ucsf/DoubletFinder

  R package for detecting doublets in single-cell RNA sequencing data

  Language:R43111197114

• 10XGenomics/cellranger

  10x Genomics Single Cell Analysis

  Language:Rust3753522494

• theislab/scgen

  Single cell perturbation prediction

  Language:Python27798056

• vsbuffalo/scidataflow

  Command line scientific data management tool

  Language:Rust21541810

• gladstone-institutes/Bioinformatics-Workshops

  Workshops presented by the Gladstone Bioinformatics Core

  Language:HTML206232367

• bnprks/BPCells

  Scaling Single Cell Analysis to Millions of Cells

  Language:C++175511018

• nanxstats/r-base-shortcuts

  ⚡ Base R shortcuts: A collection of lesser-known but powerful idioms and coding patterns for writing concise and fast R code

  Language:Shell1594717

• rezacsedu/XAI-for-bioinformatics

  Explainable AI for Bioinformatics

  Language:Jupyter Notebook1204019

• calico/borzoi

  RNA-seq prediction with deep convolutional neural networks.

  Language:Python10852313

• Bioconductor/CSAMA

  Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology

  Language:HTML9224847

• cjvanlissa/worcs

  Rstudio project template and convenience functions for the Workflow for Open Reproducible Code in Science (WORCS)

  Language:HTML81710511

• iskandr/bcb731

  Defense Against the Dark Arts

  Language:Jupyter Notebook77601

• jmschrei/bpnet-lite

  This repository hosts a minimal version of a Python API for BPNet.

  Language:Python3351314

• GreenleafLab/brainchromatin

  Code used to analyze single cell RNA and ATAC sequencing in developing human brain

  Language:R314167

• hgbrian/biocolabs

  a collection of colabs useful for molecular biology

  Language:Jupyter Notebook29412

• jmschrei/dragonnfruit

  A method for analyzing scATAC-seq experiments.

  Language:Python24259

• linnarsson-lab/fetal_brain_multiomics

  Supplementary files and notebooks to recreate figures.

  Language:HTML15221

• GreenleafLab/Brain_ASD

  Language:Python91041

• IGVF/atomic-workflows

  Workflows for pre-processing sequencing data from sequence census assays

  Language:Jupyter Notebook6622

• berenslab/read-normalization

  Companion repository to our Lause et al. (2023) preprint "Compound models and Pearson residuals for normalization of single-cell RNA-seq data without UMIs" (bioRxiv))

  Language:Jupyter Notebook340