sridhar0605's Stars
satwikkansal/wtfpython
What the f*ck Python? 😱
google/nucleus
Python and C++ code for reading and writing genomics data.
CGATOxford/UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets
maxplanck-ie/snakepipes
Customizable workflows based on snakemake and python for the analysis of NGS data
sdparekh/zUMIs
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
TransDecoder/TransDecoder
TransDecoder source
EI-CoreBioinformatics/mikado
Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.
aryeelab/guideseq
Analysis pipeline for the GUIDE-seq assay.
thelovelab/rnaseqGene
RNA-seq workflow: exploratory analysis and differential expression
eturro/mmseq
Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads
mhorlbeck/ScreenProcessing
dariober/bioinformatics-cafe
Unsorted scripts for bioinformatics
hbc/bcbioRNASeq
R package for bcbio RNA-seq analysis.
IARCbioinfo/needlestack
Multi-sample somatic variant caller
fraenkel-lab/OmicsIntegrator
This repository is the working directory for the Garnet-Forest bundle of python scripts for analyzing diverse forms of 'omic' data in a network context.
r-bioinformatics/collaboration
friedue/course_RNA-seq2015
HimesGroup/taffeta
RNAseq/DGE analysis pipeline
elitaone/SMRT-cappable-seq
Scripts used for analyzing SMRT-cappable-seq data
stephaniehicks/singlecellnano2017
Presentation at the Single Cell Nanocourse in Spring 2017 at Harvard Medical School
jakeyeung/alternative-splicing
Investigating alternative splice events, their trans-acting factors and its effect on protein-interactions.
lcdb/genomics-workshop-2018
Repostory with materials for the 2018 LCDB Genomics Workshop
bcantarel/bcantarel.github.io
Course Material
queenjobo/IGVeasy
simple scripts to generate and annotate IGV plots for trios
sigven/sv_anno
Processing and annotation of somatic structural variants
alextwc/Transcribe_CABG
Transcribe Project is a cardiac genomics project for comparing the association study outcomes of patients before and after coronary artery bypass graft surgery. The goal is hopefully to identify the functional cis and trans elements triggered by ischemia or other surgical conditions.
bchen4/training
Course materials
olgabot/rnaseek
Scripts and modules for parsing and aggregating output files from RNA-sequencing data
sridhar0605/mxnet
Lightweight, Portable, Flexible Distributed/Mobile Deep Learning with Dynamic, Mutation-aware Dataflow Dep Scheduler; for Python, R, Julia, Scala, Go, Javascript and more
stephaniehicks/scw
HSCI/Catalyst Single-cell RNA-Seq Workshop