vickyrev's Stars
thomasp85/patchwork
The Composer of ggplots
OpenGene/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
slowkow/ggrepel
:round_pushpin: Repel overlapping text labels away from each other in your ggplot2 figures.
MultiQC/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
cBioPortal/cbioportal
cBioPortal for Cancer Genomics
zqfang/GSEApy
Gene Set Enrichment Analysis in Python
corybrunson/ggalluvial
ggplot2 extension for alluvial plots
ctlab/fgsea
Fast Gene Set Enrichment Analysis
griffithlab/regtools
Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.
ncbi/ncbi-vdb
ncbi-vdb
likelet/LncPipe
A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets
JEFworks/liger
Lightweight Iterative Gene set Enrichment in R
gagneurlab/OUTRIDER
OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data
raphael-group/wext
A Weighted Exact Test for Mutually Exclusive Mutations in Cancer
data61/gossamer
Gossamer bioinformatics suite
ShengLi/edmr
Optimized DMR analysis based on bimodal normal distribution model and cost function for regional methylation analysis.
juanbot/km2gcn
Optimization process of WGCNA hierarchical clustering with k-means
miccec/yaGST
cgplab/PAMES
Tool to estimate purity of tumor samples exploiting DNA Methylation data
epigen/GBMatch
Code and metadata for glioblastoma matched analysis
ZhangJlab/MICMIC
ucsd-ccbb/gsia
Gene Set Information Analysis
WatsonLab/sm_assemblies
Analysis of protein coding exons in single molecule assemblies
AEBilgrau/DLBCLdata
Gene expression profiles on Diffuse Large B-Cell Lymphoma
gexijin/GOviz
This is a program that visualize results from enrichment analysis based on Gene Ontology etc.
OICR/mp-biopath
Mathematical Programming tool for inferring node values in perturbed biological pathways.
MarioniLab/SpikeIns2016
Code and manuscript files for Aaron's spike-in manuscript.
BBCMdP/HMMERCTTER
HMMER Cut-off Threshold Tool (HMMERCTTER): Supervised Classification of Superfamily Protein Sequences with a reliable Cut-off Threshold
splaisan/NGS-Variant-Analysis-training-2016
Adapted session for a one-day training
yueli-compbio/RIPSeeker