wangmengbo

wangmengbo's Stars

• alshedivat/al-folio

  A beautiful, simple, clean, and responsive Jekyll theme for academics

  Language:HTML11.8k2959411.4k

• italomandara/CXPatcher

  A patcher to upgrade Crossover dependencies and improve compatibility

  Language:Swift1.1k2614424

• trevismd/statannotations

  add statistical significance annotations on seaborn plots. Further development of statannot, with bugfixes, new features, and a different API.

  Language:Python69778275

• owkin/PyDESeq2

  A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

  Language:Python6131113970

• morris-lab/CellOracle

  This is the alpha version of the CellOracle package

  Language:Python324721256

• satijalab/seurat-wrappers

  Community-provided extensions to Seurat

  Language:R31711145131

• snap-stanford/GEARS

  GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations

  Language:Python22068242

• slowkow/harmonypy

  🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.

  Language:Python20662622

• Murali-group/Beeline

  BEELINE: evaluation of algorithms for gene regulatory network inference

  Language:Python179139353

• duvenaud/relax

  Optimizing control variates for black-box gradient estimation

  Language:Python16222430

• scverse/pertpy

  Perturbation Analysis in the scverse ecosystem.

  Language:Python147425523

• bunnech/cellot

  Learning Single-Cell Perturbation Responses using Neural Optimal Transport

  Language:Python12334213

• igrabski/sc-SHC

  Significance analysis for clustering single-cell RNA-sequencing data

  Language:HTML10862813

• kevinsbello/dagma

  A Python 3 package for learning Bayesian Networks (DAGs) from data. Official implementation of the paper "DAGMA: Learning DAGs via M-matrices and a Log-Determinant Acyclicity Characterization"

  Language:Python1083519

• azizilab/starfysh

  Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology

  Language:Jupyter Notebook10722714

• nitzanlab/biolord

  Language:Python71395

• sharpenb/Differentiable-DAG-Sampling

  Differentiable DAG Sampling (ICLR 2022)

  Language:C++37207

• decomverse/ACTIONet

  ACTIONet single-cell analysis framework

  366307

• omesner/knncmi

  This python code estimates conditional mutual information (CMI) and mutual information (MI) for discrete and/or continuous variables using a nearest neighbors approach.

  Language:Python332013

• josephreplogle/guide_calling

  Tools for sgRNA calling in direct capture Perturb-seq data

  Language:Python31296

• noamteyssier/adpbulk

  pseudobulking on an AnnData object

  Language:Python28271

• Accio/KEGGgraph

  The KEGGgraph package to parse KEGG pathways in R into graph objects

  Language:R134133

• microsoft/Project-BayesDAG

  Language:Python10544

• everest-castaneda/knext

  Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Markup Language File to a TSV file that is usable in network analyses.

  Language:Python9221

• mkolosick/Software-Foundations-Exercises

  Exercises in Software Foundations

  Language:Coq6200

• anotherkaizhang/fastPC

  Language:Jupyter Notebook3100

• MarkDana/scRNA-Causal-Dropout

  [ICLR'24 (oral)] Gene Regulatory Network Inference in the Presence of Dropouts: a Causal View

  Language:Python3100

• kailiangji/software-foundation-exercise

  Language:Coq2201

• ruudkoot/doodles

  A random collection of experiments in Haskell, Coq, Agda, Twelf, Erlang, ML, ...

  Language:HTML2200

• dewren99/CMPT489-PART2

  Language:HTML1101