xvazquezc

xvazquezc's Stars

• smirarab/ASTRAL

  Accurate Species TRee ALgorithm

  Language:Java235207268

• patrickbryant1/Umol

  Protein-ligand structure prediction

  Language:Jupyter Notebook18863417

• lbcb-sci/herro

  HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

  Language:Rust185154111

• ndierckx/NOVOPlasty

  NOVOPlasty - The organelle assembler and heteroplasmy caller

  Language:Perl1761423263

• soedinglab/plass

  sensitive and precise assembly of short sequencing reads

  Language:C145104613

• wwood/singlem

  Novelty-inclusive microbial community profiling of shotgun metagenomes

  Language:Python129913216

• pylelab/USalign

  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins

  Language:C++10642524

• chaoszhang/ASTER

  Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)

  Language:C++9143010

• ncbi/SSDraw

  Language:Jupyter Notebook754410

• DessimozLab/fold_tree

  snakemake pipeline for creating trees from sequence sets

  Language:Jupyter Notebook6911205

• dina-lab3D/CombFold

  Language:C++6821614

• nylander/catfasta2phyml

  Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file

  Language:Perl644522

• linxingchen/cobra

  A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.

  Language:Python592379

• biocore/songbird

  Vanilla regression methods for microbiome differential abundance analysis

  Language:Python58911325

• KarstensLab/microshades

  This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions for applying these colors to microbiome data.

  Language:R5052011

• labstructbioinf/pLM-BLAST

  Detection of remote homology by comparison of protein language model representations

  Language:Python414295

• cultivarium/GenomeSPOT

  Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome

  Language:Jupyter Notebook34472

• morgannprice/PaperBLAST

  PaperBLAST: find papers about a protein or its homologs

  Language:Perl342166

• enasequence/webin-cli

  Webin command line submission program.

  Language:Java308895

• LottePronk/whokaryote

  Classify metagenomic contigs as eukaryotic or prokaryotic

  Language:Python29187

• Juke34/awesome-awesomeness-bioinformatics

  A curated list of awesome curated lists of awesome softwares and resources in bioinformatics and affiliated areas

  28102

• AlexanderLabWHOI/EukHeist

  Language:Jupyter Notebook23315

• kaistsystemsbiology/DeepProZyme

  DeepECtransformer

  Language:Jupyter Notebook20293

• kellylab/viral-protein-function-plm

  Viral protein family functional prediction using protein language models

  Language:PureBasic174101

• Neclow/GradME

  Leaping through tree space: continuous phylogenetic inference for rooted and unrooted trees

  Language:Python11202

• BigDataBiology/GMSC-mapper

  Language:Python8223

• bougui505/alignscape

  Language:Jupyter Notebook4442

• chtsai0105/dbcanlight

  A lightweight rewrite of run_dbcan for better multithread performance

  Language:Python3101

• ColdAdaptationScripts/cold_adaptation

  Language:Python31

• ilnamkang/GTDBTk_to_Pavian

  A R script to edit GTDB-Tk results so that we can draw Sankey plots using Pavian

  Language:R2100