Acribbs

Acribbs's Stars

• nektos/act

  Run your GitHub Actions locally 🚀

  Language:Go56.8k1661.2k1.4k

• realpython/discover-flask

  Full Stack Web Development with Flask.

  Language:Python4.5k2379797

• bioconda/bioconda-recipes

  Conda recipes for the bioconda channel.

  Language:Shell1.7k961.9k3.3k

• stephencwelch/Neural-Networks-Demystified

  Supporting code for short YouTube series Neural Networks Demystified.

  Language:Jupyter Notebook1.3k6923567

• aertslab/pySCENIC

  pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.

  Language:Python46319549186

• eamid/trimap

  TriMap: Large-scale Dimensionality Reduction Using Triplets

  Language:Python30992021

• rpetit3/fastq-dl

  Download FASTQ files from SRA or ENA repositories.

  Language:Python29352124

• YuLab-SMU/ChIPseeker

  :dart: ChIP peak Annotation, Comparison and Visualization

  Language:R2332019176

• Benjamin-Lee/deep-rules

  Ten Quick Tips for Deep Learning in Biology

  Language:HTML2272713445

• cortes-ciriano-lab/SComatic

  A tool for detecting somatic variants in single cell data

  Language:Python18236828

• campbio/celda

  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data

  Language:R149710427

• theislab/sfaira

  data and model repository for single-cell data

  Language:Python135835111

• burkesquires/python_biologist

  Python Programming for Biologists

  Language:OpenEdge ABL12610175

• CGATOxford/cgat

  Do not use - please refer to our newest code: https://github.com/cgat-developers/cgat-apps

  Language:Python1243819366

• Dragonmasterx87/Interactive-3D-Plotting-in-Seurat-3.0.0

  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data

  Language:R1197829

• harbourlab/SparK

  Publication quality NGS track plotting

  Language:Python10851620

• alylab/labmanual

  Lab Manual for the Aly Lab at the University of California, Berkeley

  9510016

• montilab/hypeR

  An R Package for Geneset Enrichment Workflows

  Language:R7674811

• Bohdan-Khomtchouk/shinyheatmap

  Web application for enormous biological heatmaps

  Language:R63111324

• CGATOxford/CGATPipelines

  Collection of CGAT NGS Pipelines

  Language:Python432314818

• cgat-developers/cgat-core

  Core functionality of the CGAT code

  Language:Python3276213

• sdecesco/targetDB

  TargetDB is a tool to quickly querry multiple publicly available databases and provide an integrated view of the information available about potential targets

  Language:Jupyter Notebook2821215

• wdecoster/nanolyse

  Remove lambda phage reads from a fastq file

  Language:Python283146

• WGLab/LongGF

  A computational algorithm and software tool for fast and accurate detection of gene fusion by long-read transcriptome sequencing

  Language:C226181

• cribbslab/scflow

  Single cell pipelines

  Language:Jupyter Notebook162156

• itsvenu/ISMB2019

  R package to get tweets from ISMB/ECCB 2019 conference, Basel. Full doc: itsvenu.github.io/ismb2019/

  Language:R2100

• carlacohen/OBDS_May_2022

  OBDS course - May 2022

  Language:R1100