Angel-Wei

Angel-Wei's Stars

• fastai/fastbook

  The fastai book, published as Jupyter Notebooks

  Language:Jupyter Notebook22.1k5092368.5k

• OpenGene/fastp

  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

  Language:C++1.9k51522334

• jokergoo/ComplexHeatmap

  Make Complex Heatmaps

  Language:R1.3k351.2k228

• broadinstitute/picard

  A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

  Language:Java984156806369

• mdozmorov/scRNA-seq_notes

  A list of scRNA-seq analysis tools

  Language:R639281147

• chanzuckerberg/cellxgene

  An interactive explorer for single-cell transcriptomics data

  Language:JavaScript637331.4k120

• chris-mcginnis-ucsf/DoubletFinder

  R package for detecting doublets in single-cell RNA sequencing data

  Language:R41811196112

• agitter/single-cell-pseudotime

  An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

  41033162

• smorabit/hdWGCNA

  High dimensional weighted gene co-expression network analysis

  Language:R368532936

• theislab/scarches

  Reference mapping for single-cell genomics

  Language:Jupyter Notebook3361217251

• theislab/scib

  Benchmarking analysis of data integration tools

  Language:Python3111418763

• broadinstitute/warp

  WDL Analysis Research Pipelines

  Language:WDL202247298

• wheaton5/souporcell

  Clustering scRNAseq by genotypes

  Language:Python1681123046

• theislab/scCODA

  A Bayesian model for compositional single-cell data analysis

  Language:Jupyter Notebook15299124

• Genentech/scimilarity

  A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.

  Language:Python13211201

• statgen/demuxlet

  Genetic multiplexing of barcoded single cell RNA-seq

  Language:C++1211010326

• PaulingLiu/ROGUE

  Assessing the purity of single cell population

  Language:R11141315

• livnatje/DIALOGUE

  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map the cell transcriptome as a function of its environment.

  Language:R10694616

• JiekaiLab/scTE

  Language:Jupyter Notebook102410228

• single-cell-genetics/vireo

  Demultiplexing pooled scRNA-seq data with or without genotype reference

  Language:Python7458627

• cellgeni/batchbench

  Language:R475311

• Oshlack/speckle

  R package for specialised analysis of single cell data

  Language:R3611135

• lhe17/nebula

  Language:C++313546

• aertslab/popscle_helper_tools

  Helper tools for popscle

  Language:Shell207116

• jn-goe/gruffi

  Granular Functional Filtering (Gruffi) to isolate stressed cells

  Language:R111196

• HeleneKretzmer/EpigeneticRegulators_MouseGastrulation

  Epigenetic regulator function through mouse gastrulation

  Language:Shell7012

• daifengwanglab/ManiNetCluster

  A novel manifold learning approach to reveal the functional links between gene networks

  Language:Jupyter Notebook6100

• tanya-karagiannis/Cell-Type-Diversity-Statistic

  Language:HTML50

• hbctraining/Rmarkdown_analysis_reports

  Language:SCSS4623

• velmeshevlab/dev_hum_cortex

  Language:R4101