CTLife

CTLife's Stars

• googlehosts/hosts

  镜像：https://scaffrey.coding.net/p/hosts/git / https://git.qvq.network/googlehosts/hosts

  20.8k1.3k43010.2k

• kassambara/ggpubr

  'ggplot2' Based Publication Ready Plots

  Language:R1.1k33589165

• Illumina/strelka

  Strelka2 germline and somatic small variant caller

  Language:C++36228240105

• genometools/genometools

  GenomeTools genome analysis system.

  Language:C2982639464

• YuLab-SMU/ChIPseeker

  :dart: ChIP peak Annotation, Comparison and Visualization

  Language:R2312019176

• ryanlayer/giggle

  Interval data structure

  Language:C227205529

• jokergoo/EnrichedHeatmap

  make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.

  Language:R188138425

• tobiasrausch/alfred

  BAM Statistics, Feature Counting and Annotation

  Language:C++147104512

• asntech/intervene

  Intervene: a tool for intersection and visualization of multiple genomic region and gene sets

  Language:Python13666128

• Kingsford-Group/scallop

  Scallop is a reference-based transcriptome assembler for RNA-seq

  Language:C++89163816

• bioinform/rnacocktail

  Language:Jupyter Notebook88121248

• kdkorthauer/dmrseq

  R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing

  Language:R54106514

• brentp/hts-nim-tools

  useful command-line tools written to showcase hts-nim

  Language:Nim495116

• s-andrews/SeqMonk

  SeqMonk NGS visualisation and analysis tool

  Language:Java49102699

• costasilvati/consexpression

  Tool for RNA-Seq analysis.

  Language:Python38989

• BioinformaticsFMRP/TCGAbiolinksGUI

  TCGAbiolinksGUI code development for R/Bioconductor submission http://tcgabiolinks.fmrp.usp.br:3838/

  Language:R3595814

• khuang28jhu/bs3

  BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.

  Language:Python2733613

• cozygene/glint

  Language:Python217168

• pachterlab/aggregationDE

  Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter

  Language:R19935

• hhg7/defiant

  Differential methylation: Easy, Fast, Identification and ANnoTation

  Language:Shell173159

• sartorlab/methylSig

  R package for DNA methylation analysis

  Language:R175465

• databio/LOLAweb

  An interactive Shiny web application for genomic interval enrichment analysis using LOLA.

  Language:R165862

• vqf/nVenn

  Source code for `nVenn`

  Language:C++163412

• dariober/SICERpy

  Python wrapper around the popular ChIP-Seq peak caller SICER

  Language:Python154103

• haowenz/FEM

  A fast and efficient short read mapper

  Language:C13146

• hsinnan75/Dart

  DART – a fast and accurate RNA-seq mapper with a divide-and-conquer strategy

  Language:C12325

• ZhangJlab/MICMIC

  8214

• katrijnvandeun/SPCovR

  Sparse Principal Covariates Regression

  Language:MATLAB6101

• spabinger/prinseq_parallel

  Parallel / multithreading / multiple threads version of Prinseq

  Language:Shell4200

• al2na/scRNA.seq.course

  Analysis of single cell RNA-seq data course, Cambridge University, UK

  Language:TeX3202