Perugolate's Stars
bootandy/dust
A more intuitive version of du in rust
SebKrantz/collapse
Advanced and Fast Data Transformation in R
ruanjue/wtdbg2
Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly
cxli233/Online_R_learning
Online R learning for applied statistics
quarto-dev/quarto-nvim
Quarto mode for Neovim
marbl/merqury
k-mer based assembly evaluation
vsbuffalo/scidataflow
Command line scientific data management tool
pmelsted/bifrost
Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
popgenmethods/smcpp
SMC++ infers population history from whole-genome sequence data.
klebgenomics/Kleborate
Mykrobe-tools/mykrobe
Antibiotic resistance prediction in minutes
bacpop/ggCaller
Bifrost graph gene caller.
salzberg-lab/Balrog
Bacterial Annotation by Learned Representation of Genes
tavareshugo/tutorial_DESeq2_contrasts
lczech/grenedalf
Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments
rrwick/Core-SNP-filter
a tool to filter sites in a FASTA-format whole-genome pseudo-alignment
zreitz/multismash
A workflow and scripts for large-scale antiSMASH analyses
BonsonW/slow5curl
A library and tool for accessing remote BLOW5 files.
caozhichongchong/arg_ranker
Morteza-M-Saber/BacGWASim
A Simulator for Bacterial Machine learning and Genome-Wide Association Studies
myles-lewis/glmmSeq
Gene-level general linear mixed model
leaemiliepradier/PlasForest
A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes
bacpop/PopPIPE
Population analysis PIPEline 🛠🧬
lachmann12/tutorials
Tutorials in datamining and bioinformatics
mbhall88/tbpore
Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data
capoony/DrosEU_pipeline
Bioinformatics pipeline for the generation and analysis of the DrosEU data of 2014.
mbhall88/head_to_head_pipeline
Snakemake pipelines to run the analysis for the Illumina vs. Nanopore comparison.
sanger-pathogens/bact-gen-scripts
fdelogu/microforecast
Oscar-Delaney/optimizing-bottlenecks
Maximizing the rate of microbial adaptation under population bottlenecks, using both analytical and simulation techniques