Perugolate's Stars
duerrsimon/bioicons
A library of free open source icons for science illustrations in biology and chemistry
pjedge/longshot
diploid SNV caller for error-prone reads
open2c/bioframe
Genomic interval operations on Pandas DataFrames
algbio/themisto
Space-efficient pseudoalignment with a colored de Bruijn graph
katerinakazantseva/strainy
Graph-based assembly phasing
mourisl/centrifuger
Classifier for metagenomic sequences using FM-index with run-block compressed BWT.
jts/smrest
Tumour-only somatic mutation calling using long reads
Psy-Fer/blue-crab
crab go snap snap
larssnip/micropan
R package for microbial pangenomics
rafalab/excessmort
R package for estimating excess deaths from daily count data
j-a-thia/genomalicious
A smorgasbord of R functions for population genomic analyses
sgkit-dev/bio2zarr
Convert bioinformatics file formats to Zarr
pachterlab/RMEJLBASBMP_2024
Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"
treangenlab/Olivar
Olivar: automated variant aware primer design for multiplex tiled amplicon sequencing
interpretAMR/AMRrules
Interpretative standards for AMR genotypes
vsbuffalo/slimflow
BirkbeckCTP/janeway-indesign-template
A free-to-use Adobe InDesign template for scholarly publishing
advrk/PNAS2021
THJlab/seqNdisplayR
Produce reproducible, pretty genome coverage plots using highly customizable layout and coverage normalization, batch correction etc.
tamas-ferenci/MortalityPrediction
MortalityPrediction
cednotsed/vertebrate_host_jumps
artic-network/artic-rsv
andrewmoles2/training-resources
Repository of various useful resources for training
EisenRa/2023_HiFi_comparison_mice
GSTT-CIDR/RespiratoryCmg
harry-thorpe/demix_check
pczuppon/AMRWithinHost
Code to reproduce the results of the manuscript "Stochastic within-host dynamics of antibiotic resistance: Resistant survival probability, size at the end of treatment and carriage time after treatment"
DongzeHE/simpleaf
A rust framework to make using alevin-fry even simpler
JSHuisman/Recorder
Oscar-Delaney/Honours
Antibiotic resistance evolution with Jan Engelstaedter and Andrew Letten