Veraqxb

Veraqxb's Stars

• dvanoni/notero

  A Zotero plugin for syncing items and notes into Notion

  Language:TypeScript2.5k26259107

• alexdobin/STAR

  RNA-seq aligner

  Language:C1.9k792.1k513

• broadinstitute/gatk

  Official code repository for GATK versions 4 and up

  Language:Java1.7k1544.6k596

• lh3/bwa

  Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

  Language:C1.6k107309555

• leventov/Koloboke

  Java Collections till the last breadcrumb of memory and performance

  Language:Java1k8671140

• broadinstitute/picard

  A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

  Language:Java991157808371

• arq5x/bedtools2

  bedtools - the swiss army knife for genome arithmetic

  Language:C94758837287

• DaehwanKimLab/hisat2

  Graph-based alignment (Hierarchical Graph FM index)

  Language:C++48738361121

• lh3/minigraph

  Sequence-to-graph mapper and graph generator

  Language:C4262811838

• twbattaglia/RNAseq-workflow

  A repository for setting up a RNAseq workflow

  Language:R420273182

• amkozlov/raxml-ng

  RAxML Next Generation: faster, easier-to-use and more flexible

  Language:C++4042018563

• Ming-Lian/NGS-analysis

  二代测序数据分析

  354121164

• oushujun/EDTA

  Extensive de-novo TE Annotator

  Language:Perl3541151574

• simonhmartin/genomics_general

  General tools for genomic analyses.

  Language:Python352912394

• erdogant/pca

  pca: A Python Package for Principal Component Analysis.

  Language:Jupyter Notebook30055344

• Kinggerm/GetOrganelle

  Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)

  Language:Python2961125354

• wyp1125/MCScanX

  MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!

  Language:CAP CDS237157162

• sanger-pathogens/circlator

  A tool to circularize genome assemblies

  Language:Python2332110459

• songlab-cal/gpn

  Genomic Pre-trained Network

  Language:Jupyter Notebook21173226

• Starlitnightly/single_cell_tutorial

  单细胞分析的中文pipeline

  1782331

• millanek/Dsuite

  Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species

  Language:C++16599425

• linzhi2013/MitoZ

  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes

  Language:Shell1191222239

• signalbash/how_are_we_stranded_here

  Check strandedness of RNA-Seq fastq files

  Language:Python11852025

• GSLBiotech/mafft

  Align multiple amino acid or nucleotide sequences.

  Language:C52367

• kage-genotyper/kage

  Alignment-free genotyper for SNPs and short indels, implemented in Python.

  Language:Python486162

• HajkD/LTRpred

  De novo annotation of young retrotransposons

  Language:R465278

• pkalbers/geva

  Genealogical Estimation of Variant Age (GEVA)

  Language:C++273130

• LeanQ/SPLITREADER

  Split-read pipeline for the identification of non-reference TE insertions with TSDs

  Language:Shell24129

• hwc2021/GSAT

  Graph-based Sequence Assembly Toolkit

  Language:Perl202136

• shuyuzheng/Chloroplot

  A R tool to parse and visualize chloroplast genomes

  Language:R9252