bokulich-lab/RESCRIPt

Issues

• How can I find the installation package for RESCRIPt that is compatible with QIIME 2024.2.0?

  #210 opened 25 days ago by tata831
  1

• get-ncbi-genomes: custom rank information

  #194 opened a month ago by nbokulich
  1

• orient-seqs: accept FASTQ data as input

  #159 opened a year ago by nbokulich
  3

• Remove heavy dependencies

  #163 opened a year ago by ebolyen
  7

• ENH: Add support to fetch data from BV-BRC.

  #200 opened 2 months ago by VinzentRisch
  0

• Use NCBI API keys in get-ncbi-data command

  #145 opened 3 months ago by hemprichbennett
  1

• SILVA 138.2 ssu-nr99 database, only 6 levels

  #201 opened 4 months ago by feixiang1209
  1

• ENH: extract-seq-segments add param "min_coverage"

  #195 opened 4 months ago by nbokulich
  1

• ENH: Add SILVA 138.2 to `get-silva-data`

  #196 opened 4 months ago by mikerobeson
  0

• Authentication error with Option 2: Install within QIIME 2 environment

  #160 opened 6 months ago by singhdharmesh
  1

• ENH: Add the ability to fetch the latest GTDB database (v220) to `get-gtdb-data`

  #183 opened 6 months ago by mikerobeson
  1

• `trim-alignment` : expose multithreading

  #127 opened 6 months ago by nbokulich
  1

• get-ncbi-data Command Error

  #185 opened 6 months ago by rachelhawrit
  1

• full SILVA LSU download

  #182 opened 8 months ago by sghignone
  3

• which rescript version for qiime2 2022.11?

  #180 opened 8 months ago by PeSteff
  2

• ENH: action to get preformatted blast databases

  #135 opened 3 years ago by nbokulich
  1

• providing primers for `trim-alignment` provides different output vs explicit column positions for the same primers.

  #175 opened 10 months ago by mikerobeson
  0

• `trim-alignment` : documentation updates

  #128 opened 3 years ago by nbokulich
  2

• ENH: `trim-alignment`, add `--p-addfragments` flag when using primer search option.

  #173 opened 10 months ago by mikerobeson
  1

• Rescript installation in q2-amplicon-2023.9

  #171 opened 10 months ago by ARW-UBT
  1

• ENH: Add option to download the corrected `214.1` GTDB database.

  #168 opened a year ago by mikerobeson
  2

• ENH: Add option to download `ssu_all_<release>.tar.gz` from GTDB.

  #167 opened a year ago by mikerobeson
  1

• ENH: add action for `get_unite_data`

  #123 opened a year ago by nbokulich
  38

• Update help text for clarity: `dereplicate --p-mode super`

  #165 opened a year ago by mikerobeson
  0

• MAINT: update `orient-seqs` to use vsearch `orient`

  #146 opened a year ago by nbokulich
  0

• REVERT future warning for orient-seqs

  #151 opened a year ago by nbokulich
  0

• Sequence identifier warnings from `get-ncbi-data`.

  #158 opened 2 years ago by mikerobeson
  0

• Add support for NCBI Datasets project

  #96 opened 2 years ago by misialq
  2

• Add support for gtdb release 214

  #156 opened 2 years ago by magicprotoss
  1

• Download RefSeq Genomes and associated Taxonomy

  #125 opened 2 years ago by mikerobeson
  3

• IMP: update dereplicate backfilling functionality

  #122 opened 2 years ago by mikerobeson
  0

• How to train the classifier with mixed forward primers?

  #152 opened 2 years ago by BirongZhang
  2

• dep: update joblib to 1.2 with new module structure

  #143 opened 2 years ago by lizgehret
  2

• ENH: add vsearch's `-qsegout` option to RESCRIPt

  #136 opened 2 years ago by mikerobeson
  3

• ENH: refactor + parallelize the `evaluate-fit-classifier` and cross-validate pipelines

  #131 opened 3 years ago by nbokulich
  0

• [ENH] `trim-alignment`: how to deal with gappy primer alignments?

  #129 opened 3 years ago by nbokulich
  1

• Error from evaluate-fit-classifier: "This classifier does not support confidence values"

  #126 opened 3 years ago by alexkrohn
  2

• Migrate transformers, etc... to qiime2/q2-types

  #105 opened 4 years ago by mikerobeson
  4

• Request for function to reverse complement

  #119 opened 3 years ago by jwdebelius
  4

• ENH: add action for `get_gg_data`

  #124 opened 3 years ago by colinbrislawn
  4

• DOC: Add better description of rank propagation

  #117 opened 3 years ago by mikerobeson
  1

• BUG: merge_taxa reorders columns during merge

  #112 opened 3 years ago by misialq
  0

• BUG: merge_taxa LCA modes leave empty labels when there is no LCA

  #111 opened 3 years ago by nbokulich
  0

• Migrate to python 3.8

  #103 opened 3 years ago by misialq
  1

• add example gallery

  #109 opened 3 years ago by nbokulich
  1

• QIIME2 error after installing RESCRIPt

  #108 opened 3 years ago by Channy-736
  0

• Include RESCRIPt in qiime docker

  #107 opened 4 years ago by asafpr
  2

• update documentation for 2021.2.0

  #98 opened 4 years ago by nbokulich
  0

• Update `get-silva-data` for downloading SILVA 138.1 LSU data

  #97 opened 4 years ago by mikerobeson
  1

• qiime2-2021.2 installation error

  #94 opened 4 years ago by jwdebelius
  2