g2nb/igv-jupyter

Issues

• Support for JupyterHub 4?

  #52 opened 6 months ago by ecederstrand
  1

• Trouble loading azure or local crams

  #51 opened 8 months ago by kateelliottarc
  1

• 1.0.0 release not tagged

  #50 opened 3 years ago by twrightsman
  1

• Specify local file paths outside the project folder

  #25 opened 5 years ago by khourhin
  5

• Problems loading GTF file

  #48 opened 3 years ago by sagnikbanerjee15
  2

• export information of a variant

  #47 opened 3 years ago by asmlgkj
  2

• .show() produces no output when offline

  #46 opened 3 years ago by sigurjonaxel
  2

• Problems using files/ to access local .fa file

  #45 opened 3 years ago by mezarque
  6

• Feature Request: Support for ROI

  #44 opened 3 years ago by Sammi-Smith
  4

• `.show()` produces no output

  #43 opened 3 years ago by jamesbaye
  1

• Unable to Load Local Bam File

  #35 opened 4 years ago by callieboskin
  3

• Feature Request: Support for JupyterLab

  #38 opened 4 years ago by jonn-smith
  4

• "Error loading track data" in Jupyter notebook when trying to load local BAM file

  #40 opened 3 years ago by enushi
  13

• "Error accessing resource: presigned url Status:0" when trying to load presigned url to igv-jupyter

  #42 opened 4 years ago by JoannaTan
  2

• IGV Browser with local reference genome fasta file

  #41 opened 4 years ago by Irsan88
  8

• Install igv on Jupyter lab

  #13 opened 4 years ago by amirshams84
  10

• b.show() AttributeError: 'NoneType' object has no attribute 'session'

  #39 opened 4 years ago by cccnrc
  6

• Entire extend of the deletion not highlighted in notebook

  #36 opened 4 years ago by vkullu
  3

• How to use other fasta file as the reference

  #34 opened 4 years ago by Sotdo
  1

• problems when editing output SVG file in Illustrator

  #37 opened 4 years ago by rysterzhu
  3

• Enable trackclick events in igv-jupyter

  #26 opened 4 years ago by pwrose
  1

• Various display improvement suggestions

  #17 opened 4 years ago by a-slide
  2

• IGV Browser not ready

  #29 opened 4 years ago by vanetten
  27

• 'IGV Browser not ready'

  #23 opened 6 years ago by sooheelee
  30

• bam file won't display

  #33 opened 4 years ago by njbernstein
  6

• Error when running show()

  #28 opened 5 years ago by dakomura
  2

• Extensions enabled, but .show() .load_track() don't work

  #27 opened 5 years ago by JasonJWilliamsNY
  2

• Solution for notebook sharing with embed IGV widget

  #12 opened 5 years ago by a-slide
  4

• Export png or widget

  #1 opened 5 years ago by jfear
  5

• Pythonisation

  #16 opened 5 years ago by a-slide
  0

• Running a demo on MyBinder

  #20 opened 5 years ago by psychemedia
  9

• Changing References does nothing

  #11 opened 6 years ago by ijoseph
  6

• multiple bigwigs in one track?

  #22 opened 6 years ago by sunworshipper
  2

• Add image output API

  #15 opened 6 years ago by jrobinso
  6

• Bam reads are cutoff

  #8 opened 6 years ago by jfear
  10

• cannot install jupyter with conda

  #10 opened 6 years ago by dridk
  2

• BigWig files visualization using built-in Jupyter server

  #9 opened 6 years ago by NemanjaVucic90
  16

• Can't access local file: range-byte header ignored

  #7 opened 8 years ago by jfear
  6

• jupyter notebook igv, doubleClickDelay=1 does not disable "double click to zoom"

  #6 opened 8 years ago by paul-shannon
  11

• Passing over GRanges to IGV.js

  #5 opened 8 years ago by KhagayN
  1

• how would I actually view the plot?

  #4 opened 8 years ago by KhagayN
  9

• Rename "search_track" to "search" and update comment

  #3 opened 8 years ago by jrobinso
  1

• igv.js in a notebook: specify track from, eg, a pandas (bed-like) data.frame

  #2 opened 8 years ago by paul-shannon
  9