gungorbudak

gungorbudak's Stars

• apache/echarts

  Apache ECharts is a powerful, interactive charting and data visualization library for browser

  Language:TypeScript59.3k2k18.1k19.6k

• microsoft/AI-For-Beginners

  12 Weeks, 24 Lessons, AI for All!

  Language:Jupyter Notebook32.1k3921075.2k

• vgteam/vg

  tools for working with genome variation graphs

  Language:C++1.1k482k191

• theNewDynamic/gohugo-theme-ananke

  Ananke: A theme for Hugo Sites

  Language:HTML1.1k233681.1k

• chaimleib/intervaltree

  A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.

  Language:Python6101893100

• vcflib/vcflib

  C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

  Language:C++60339270219

• Martinsos/edlib

  Lightweight, super fast C/C++ (& Python) library for sequence alignment using edit (Levenshtein) distance.

  Language:C++48822174160

• ComparativeGenomicsToolkit/cactus

  Official home of genome aligner based upon notion of Cactus graphs

  Language:C47921786104

• Illumina/strelka

  Strelka2 germline and somatic small variant caller

  Language:C++35029237102

• RealTimeGenomics/rtg-tools

  RTG Tools: Utilities for accurate VCF comparison and manipulation

  Language:Java28121050

• open2c/bioframe

  Genomic Interval Operations on Pandas DataFrames

  Language:Python1631310526

• Illumina/DRAGMAP

  DRAGEN open-source mapper

  Language:C++148195428

• lh3/bgt

  Flexible genotype query among 30,000+ samples whole-genome

  Language:C9516169

• Griffan/VerifyBamID

  VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

  Language:mupad9085515

• human-pangenomics/hpp_pangenome_resources

  823163

• TimD1/vcfdist

  vcfdist: Accurately benchmarking phased variant calls

  Language:C++675255

• asylvz/SVarp

  Phased structural variant discovery in pangenomes

  Language:C++241

• truncgil/Finans

  Altın ve döviz bilgilerini kullanarak yazılım geliştirme işlemini yapan yazılım geliştiricilerine son derece pratik hazırlanmış kolay kullanımlı Trunçgil Finans JSON API'miz yayındadır. Bildiğimiz üzere TCMB yalnızca kur bilgilerini veriyor altın bilgileri için alternatif kaynaklara yönelmemiz gerekiyordu. Ancak tek bir API üzerinde ayrıntılı altın bilgilerinin yanı sıra Dolar ve Euro cinsi para birimlerinin de alış ve satış fiyatına erişebiliyorsunuz.

  Language:PHP23203

• pangenome/vcfbub

  use variant nesting information to flter overlapping sites from vg deconstruct output

  Language:Rust22551

• kensung-lab/INSurVeyor

  An insertion caller for Illumina paired-end WGS data.

  Language:C++173202

• kcleal/SV_Benchmark_CMRG

  Structural variant benchmark of challenging medically relevant genes

  Language:Shell15201

• pangenome/HPRCyear1v2genbank

  building a human pangenome from the HPRCy1v2 genbank accessioned assemblies

  Language:Shell120

• Sentieon/sentieon-dnascope-ml

  Sentieon DNAscope + Machine Learning Model

  Language:Shell10203

• Sentieon/sentieon-models

  Model files for Sentieon variant callers

  101

• mskilab-org/nf-jabba

  Language:R8

• netlab-ku/pyPARAGON

  PAgeRAnk-flux on Graphlet-guided network for multi-Omic data integratioN - Network Inference

  Language:Jupyter Notebook81

• muddinmbru/arab_pangenome_reference

  3

• ideateknoloji/FPDetect

  Windows and Linux Based Applications of Filtering SNPs using Genomic Features and Quality Metrics

  2

• Shuhua-Group/PanGenome_VCF_PostProcess

  A simple pipeline to process the VCF deconstructed from the VG pangenome graph

  Language:Python2001

• jmcdani/giab-chrXY-benchmark

  Language:Jupyter Notebook10