he-hai's Stars
jakevdp/PythonDataScienceHandbook
Python Data Science Handbook: full text in Jupyter Notebooks
odoo/odoo
Odoo. Open Source Apps To Grow Your Business.
typst/typst
A new markup-based typesetting system that is powerful and easy to learn.
yeasy/docker_practice
Learn and understand Docker&Container technologies, with real DevOps practice!
openvpi/DiffSinger
An advanced singing voice synthesis system with high fidelity, expressiveness, controllability and flexibility based on DiffSinger: Singing Voice Synthesis via Shallow Diffusion Mechanism
cmdcolin/awesome-genome-visualization
A list of interesting genome browser or genome-browser-like implementations
tseemann/prokka
:zap: :aquarius: Rapid prokaryotic genome annotation
steineggerlab/foldseek
Foldseek enables fast and sensitive comparisons of large structure sets.
rgerum/pylustrator
Visualisations of data are at the core of every publication of scientific research results. They have to be as clear as possible to facilitate the communication of research. As data can have different formats and shapes, the visualisations often have to be adapted to reflect the data as well as possible. We developed Pylustrator, an interface to directly edit python generated matplotlib graphs to finalize them for publication. Therefore, subplots can be resized and dragged around by the mouse, text and annotations can be added. The changes can be saved to the initial plot file as python code.
oschwengers/bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
SDXorg/pysd
System Dynamics Modeling in Python
VoigtLab/dnaplotlib
DNA plotting library for Python
vdemichev/DiaNN
DIA-NN - a universal automated software suite for DIA proteomics data analysis.
tttianhao/CLEAN
CLEAN: a contrastive learning model for high-quality functional prediction of proteins
ProteoWizard/pwiz
The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis software.
StaPH-B/docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
SBRG/ssbio
A Python framework for structural systems biology
mmcguffi/pLannotate
Webserver and command line tool for annotating engineered plasmids
robert-haas/gravis
Interactive graph visualizations with Python and HTML/CSS/JS.
RoadToDream/ZotMeta
ZotMeta is a Zotero plugin to update existing articles/books metadata.
kevinkovalchik/RawTools
RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control analysis of Thermo Orbitrap raw mass spectrometer files from data-dependent acquisition experiments.
BeatsonLab-MicrobialGenomics/micropipe
A pipeline for high-quality bacterial genome construction using ONT sequencing
SynBioDex/pySBOL3
Native python implementation of SBOL 3.0 specification
ethanbass/chromConverter
Parsers for chromatography data in R (HPLC-DAD/UV, GC-FID, MS)
evanyeyeye/rainbow
Read chromatography and mass spectrometry binary files.
HarrisonSteel/ChiBio
ChiBio primary operating system.
CovertLab/wcEcoli
Whole Cell Model of E. coli
GodzikLab/FATCAT-dist
ThomasDOtto/ratt
Rapid Annotation Transfer Tool
Waztom/mscheck