he-hai

he-hai's Stars

• jakevdp/PythonDataScienceHandbook

  Python Data Science Handbook: full text in Jupyter Notebooks

  Language:Jupyter Notebook42.7k1.8k19217.8k

• odoo/odoo

  Odoo. Open Source Apps To Grow Your Business.

  Language:Python37.3k1.5k17.6k24.2k

• typst/typst

  A new markup-based typesetting system that is powerful and easy to learn.

  Language:Rust32.6k852.4k871

• yeasy/docker_practice

  Learn and understand Docker&Container technologies, with real DevOps practice!

  Language:Go24.7k8442115.7k

• openvpi/DiffSinger

  An advanced singing voice synthesis system with high fidelity, expressiveness, controllability and flexibility based on DiffSinger: Singing Voice Synthesis via Shallow Diffusion Mechanism

  Language:Python2.7k3699278

• cmdcolin/awesome-genome-visualization

  A list of interesting genome browser or genome-browser-like implementations

  Language:TypeScript819289107

• tseemann/prokka

  :zap: :aquarius: Rapid prokaryotic genome annotation

  Language:Perl80947643222

• steineggerlab/foldseek

  Foldseek enables fast and sensitive comparisons of large structure sets.

  Language:C76219307100

• rgerum/pylustrator

  Visualisations of data are at the core of every publication of scientific research results. They have to be as clear as possible to facilitate the communication of research. As data can have different formats and shapes, the visualisations often have to be adapted to reflect the data as well as possible. We developed Pylustrator, an interface to directly edit python generated matplotlib graphs to finalize them for publication. Therefore, subplots can be resized and dragged around by the mouse, text and annotations can be added. The changes can be saved to the initial plot file as python code.

  Language:Python705145438

• oschwengers/bakta

  Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

  Language:Python4261322151

• SDXorg/pysd

  System Dynamics Modeling in Python

  Language:Python3652729487

• VoigtLab/dnaplotlib

  DNA plotting library for Python

  Language:Python287251973

• vdemichev/DiaNN

  DIA-NN - a universal automated software suite for DIA proteomics data analysis.

  Language:C++2592166753

• tttianhao/CLEAN

  CLEAN: a contrastive learning model for high-quality functional prediction of proteins

  Language:Python21674241

• ProteoWizard/pwiz

  The ProteoWizard Library is a set of software libraries and tools for rapid development of mass spectrometry and proteomic data analysis software.

  Language:C#2151427797

• StaPH-B/docker-builds

  :package: :whale: Dockerfiles and documentation on tools for public health bioinformatics

  Language:Dockerfile18212352116

• SBRG/ssbio

  A Python framework for structural systems biology

  Language:Python103174028

• mmcguffi/pLannotate

  Webserver and command line tool for annotating engineered plasmids

  Language:Python100113320

• robert-haas/gravis

  Interactive graph visualizations with Python and HTML/CSS/JS.

  Language:HTML951127

• RoadToDream/ZotMeta

  ZotMeta is a Zotero plugin to update existing articles/books metadata.

  Language:JavaScript69142

• kevinkovalchik/RawTools

  RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control analysis of Thermo Orbitrap raw mass spectrometer files from data-dependent acquisition experiments.

  Language:C#6468020

• BeatsonLab-MicrobialGenomics/micropipe

  A pipeline for high-quality bacterial genome construction using ONT sequencing

  Language:HTML38979

• SynBioDex/pySBOL3

  Native python implementation of SBOL 3.0 specification

  Language:Python361521716

• ethanbass/chromConverter

  Parsers for chromatography data in R (HPLC-DAD/UV, GC-FID, MS)

  Language:R285203

• evanyeyeye/rainbow

  Read chromatography and mass spectrometry binary files.

  Language:Python2871414

• HarrisonSteel/ChiBio

  ChiBio primary operating system.

  Language:Python238328

• CovertLab/wcEcoli

  Whole Cell Model of E. coli

  Language:Python18183694

• GodzikLab/FATCAT-dist

  Language:PostScript13477

• ThomasDOtto/ratt

  Rapid Annotation Transfer Tool

  Language:Perl83114

• Waztom/mscheck

  Language:Python5222