hjshim

hjshim's Stars

• tseemann/prokka

  :zap: :aquarius: Rapid prokaryotic genome annotation

  Language:Perl82447647225

• nanoporetech/medaka

  Sequence correction provided by ONT Research

  Language:Python4114649874

• conda/conda-docs

  Conda documentation

  38149177497

• nextgenusfs/funannotate

  Eukaryotic Genome Annotation Pipeline

  Language:Python320161k85

• EddyRivasLab/hmmer

  HMMER: biological sequence analysis using profile HMMs

  Language:C3091227569

• rrwick/Filtlong

  quality filtering tool for long reads

  Language:C++281143828

• ncbi/amr

  AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.

  Language:C++2652611637

• sanger-pathogens/circlator

  A tool to circularize genome assemblies

  Language:Python2302110459

• microsoft/protein-sequence-models

  Language:Python226141828

• oschwengers/platon

  Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

  Language:Python10864215

• nanoporetech/read_until_api

  Read Until client library for Nanopore Sequencing

  Language:Python10243012

• jaswindersingh2/SPOT-RNA

  RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.

  Language:Perl9462033

• MicrobeLab/DeepMicrobes

  DeepMicrobes: taxonomic classification for metagenomics with deep learning

  Language:Python8363721

• artic-network/rampart

  Read Assignment, Mapping, and Phylogenetic Analysis in Real Time

  Language:JavaScript79168534

• bhattlab/lathe

  A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing

  Language:Python6982518

• epi2me-labs/wf-metagenomics

  Metagenomic classification of long-read sequencing data

  Language:Nextflow55611923

• gem-pasteur/macsyfinder

  MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.

  Language:Python51107117

• LaboratorioBioinformatica/MARVEL

  MARVEL: Metagenomic Analyses and Retrieval of Viral ELements

  Language:Python504615

• rnajena/bertax

  Taxonomic classification of DNA sequences

  Language:Python503187

• lskatz/Kalamari

  :octopus: A curated database of completed assemblies with taxonomy IDs

  Language:Perl396283

• dib-lab/genome-grist

  map Illumina metagenomes to genomes!

  Language:Jupyter Notebook36221716

• brianjimenez/pydock_tutorial

  PyDock Tutorial

  Language:C++30116

• NeuroCSUT/ViraMiner

  CNN based classifier for detecting viral sequences among metagenomic contigs

  Language:Python305217

• michaelkyu/PlasX

  PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture

  Language:Python28291

• ivlachos/agamemnon

  Accurate metagenomi/metatranscriptomic analysis pipeline

  Language:R22563

• satoken/centroid-rna-package

  Centroid RNA package

  Language:C++19476

• Dmitry-Antipov/viralFlye

  viralFlye pipeline

  Language:Python18266

• PlantDr430/FunFinder_Pangenome

  Data analysis of Funannotate and Orthofinder outputs to Pangenome results

  Language:Python16105

• mlazeroff/PhageCommander

  Language:Python7362

• CRISPRlab/CRISPRclassify

  Language:Java6220