leahkemp

leahkemp's Stars

• github/gitignore

  A collection of useful .gitignore templates

  162k3.4k083.1k

• pi-hole/pi-hole

  A black hole for Internet advertisements

  Language:Shell49.1k7102.9k2.7k

• kubernetes/minikube

  Run Kubernetes locally

  Language:Go29.4k4859.7k4.9k

• fish-shell/fish-shell

  The user-friendly command line shell.

  Language:Rust26.1k2837.2k1.9k

• newren/git-filter-repo

  Quickly rewrite git repository history (filter-branch replacement)

  Language:Python8.4k51379705

• quarto-dev/quarto-cli

  Open-source scientific and technical publishing system built on Pandoc.

  Language:JavaScript3.9k325.1k324

• stephenturner/oneliners

  Useful bash one-liners for bioinformatics.

  1.9k15510520

• ThinkR-open/golem

  A Framework for Building Robust Shiny Apps

  Language:R91423635133

• r-lib/testthat

  An R 📦 to make testing 😀

  Language:R890201.3k318

• BioContainers/containers

  Bioinformatics containers

  Language:Dockerfile68332288249

• malonge/RagTag

  Tools for fast and flexible genome assembly scaffolding and improvement

  Language:Python471818749

• RinteRface/shinyMobile

  shiny API for Framework7 (IOS/android)

  Language:R4051719874

• nf-core/sarek

  Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

  Language:Nextflow404134721412

• kishwarshafin/pepper

  PEPPER-Margin-DeepVariant

  Language:Python2451019542

• dariober/ASCIIGenome

  Text Only Genome Viewer!

  Language:Java20688214

• open2c/cooler

  A cool place to store your Hi-C

  Language:Python2061429250

• broadinstitute/warp

  WDL Analysis Research Pipelines

  Language:WDL202247096

• mixOmicsTeam/mixOmics

  Development repository for the Bioconductor package 'mixOmics '

  Language:R161922752

• nanoporetech/remora

  Methylation/modified base calling separated from basecalling.

  Language:Python1562019320

• snakemake/snakefmt

  The uncompromising Snakemake code formatter

  Language:Python153712629

• nanoporetech/ont_fast5_api

  Oxford Nanopore Technologies fast5 API software

  Language:Python148187729

• brentp/echtvar

  using all the bits for echt rapid variant annotation and filtering

  Language:Rust14152910

• adamewing/methylartist

  Tools for plotting methylation data in various ways

  Language:Python13059510

• nf-core/test-datasets

  Test data to be used for automated testing with the nf-core pipelines

  10514654352

• wlandau/targets-tutorial

  Short course on the targets R package

  Language:R9551624

• nf-core/raredisease

  Call and score variants from WGS/WES of rare disease patients.

  Language:Nextflow8715621534

• higlass/higlass-docker

  Builds a docker container wrapping higlass-server and higlass-client in nginx

  Language:Shell32610814

• rkitchen/exceRpt

  Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets

  Language:HTML194026

• miRTop/mirtop

  command lines tool to annotate miRNAs with a standard mirna/isomir naming

  Language:Python17105824

• deWitLab/GENOVA

  GENome Organisation Visual Analytics

  Language:R13100