nf-core/test-datasets

Issues

• simulate single end long reads matching genomeqc test inputs

  #1365 opened a month ago by stephenturner
  1

• Testdata for xeniumranger modules

  #1208 opened 2 months ago by khersameesh24
  0

• Test data for xenium pipeline - spatialxe

  #1345 opened 2 months ago by khersameesh24
  0

• Rearrange and rename the `delete_me` folder

  #1245 opened 5 months ago by SPPearce
  2

• Very carefully delete any branches that are unnecessary (especially ones that have already been merged)

  #1249 opened 5 months ago by SPPearce
  3

• Is there a better way to provide test-data for modules than we currently have, with the two stage process.

  #1251 opened 5 months ago by SPPearce
  1

• Add sets of species nucleotide.fasta or protein.fasta for orthology analysis

  #661 opened 3 months ago by chriswyatt1
  0

• Organise and document the files that we currently have better, rather than one massive README with single lines of text.

  #1247 opened 5 months ago by SPPearce
  0

• aws s3 links

  #1252 opened 5 months ago by SPPearce
  0

• Modules test-data task force master list

  #1243 opened 5 months ago by SPPearce
  0

• If we are not allowing links to external git files, then we need to deal with all those files

  #1250 opened 5 months ago by SPPearce
  1

• Set up a GitHub bot to automatically post links to new PRs into the #request-review or #test-datasets slack channels.

  #1244 opened 5 months ago by SPPearce
  0

• Generate a page on the website to be able to view the current test data

  #1248 opened 5 months ago by SPPearce
  0

• Determine what we want to do with tools with very specific test data files

  #1246 opened 5 months ago by SPPearce
  0

• Update test data for bcl_demultiplex subworkflow

  #1240 opened 5 months ago by k1sauce
  0

• Need testdata for mcmicro-celesta

  #1131 opened 8 months ago by LukasHats
  0

• Test data required for testing scimap/spatiallda module

  #1130 opened 8 months ago by chiarasch
  0

• add testdata for variantbenchmarking pipeline

  #1107 opened 9 months ago by kubranarci
  0

• Request to add ONT-Amplicon seq for SARS-CoV-2:Wastewater

  #1087 opened 10 months ago by arunbodd
  0

• CAT - Contig Annotation Tool custom database

  #1102 opened 9 months ago by maxibor
  1

• [modules] Dataset at `data/genomics/homo_sapiens/illumina/bcl` is too simple

  #996 opened 10 months ago by Aratz
  1

• What should we do with `docs/ADD_NEW_DATA.md` and `docs/USE_EXISTING_DATA.md` on pipeline branches?

  #1069 opened 10 months ago by Aratz
  0

• Add test datasets for imaging modules

  #822 opened a year ago by adamjtaylor
  3

• Add new test data for modkit_pileup

  #1050 opened a year ago by Michal-Babins
  0

• Homo sapiens Genome.gtf test-dataset is invalid

  #1028 opened a year ago by JackCurragh
  0

• add a new dataset for est-sfs

  #1019 opened a year ago by BioInf2305
  0

• [`taxprofiler` branch] Add new taxprofiler `sourmash` db

  #1018 opened a year ago by vmikk
  0

• Use version tags on branches

  #993 opened a year ago by edmundmiller
  1

• Use git-lfs

  #992 opened a year ago by edmundmiller
  0

• Pipedreams

  #991 opened a year ago by edmundmiller
  0

• cellranger data refactor broke tests for non-cellranger modules

  #917 opened a year ago by klkeys
  0

• fix missing `cellranger` data summary info

  #883 opened 2 years ago by klkeys
  1

• Add database subsampled data for snpSift module (dbnsnpf)

  #875 opened 2 years ago by LlaneroHiboreo
  1

• refactor test data for `cellranger` modules

  #867 opened 2 years ago by klkeys
  1

• Move unsorted data into the generic data dir

  #856 opened 2 years ago by DLBPointon
  0

• Add Unsorted text data

  #853 opened 2 years ago by DLBPointon
  0

• Add new test data for sammyseq

  #832 opened 2 years ago by daisymut
  0

• Rename spatialomics to imaging for modules branch

  #815 opened 2 years ago by adamjtaylor
  2

• Add cyano nucleotide taxonomy to phyloplace test data

  #814 opened 2 years ago by erikrikarddaniel
  0

• Add bed file for ONCOCNV

  #691 opened 2 years ago by marrip
  0

• Re-run tests of all affected modules when a given test-data file is updated/modified

  #626 opened 2 years ago by jfy133
  0

• Split modules vs pipeline test module

  #625 opened 2 years ago by jfy133
  0

• Including indexing files for new module verifybamid

  #603 opened 2 years ago by manifestoso
  3

• Clean up bam/cram homo_sapiens files for modules tests data

  #525 opened 3 years ago by FriederikeHanssen
  0

• Remove ambiguous bases from MAG test data

  #481 opened 3 years ago by jfy133
  0

• Update & complete documentation on modules test-data for homo-sapiens

  #357 opened 3 years ago by FriederikeHanssen
  0

• Mismatch in test .csv file

  #209 opened 3 years ago by danwiththeplan
  1

• git clone not working

  #301 opened 3 years ago by luantunez
  2

• Documentation for applying sarek to nf-core test data

  #212 opened 4 years ago by bnwlf
  2

• error in gff file (rnaseq branch test-datasets/reference/genes.gff)

  #117 opened 5 years ago by Juke34
  2