maxiaopeng

maxiaopeng's Stars

• scipy/scipy

  SciPy library main repository

  Language:Python12.9k34710.3k5.1k

• satijalab/seurat

  R toolkit for single cell genomics

  Language:R2.2k737.9k902

• IndrajeetPatil/ggstatsplot

  Enhancing {ggplot2} plots with statistical analysis 📊📣

  Language:R2k43587184

• karthik/wesanderson

  A Wes Anderson color palette for R

  Language:R1.9k5025142

• dreamRs/esquisse

  RStudio add-in to make plots interactively with ggplot2

  Language:R1.8k51229229

• jrowen/rhandsontable

  A htmlwidgets implementation of Handsontable.js

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• stemangiola/tidyHeatmap

  Draw heatmap simply using a tidy data frame

  Language:R29675623

• ewenharrison/finalfit

  Quickly create elegant regression results tables and plots when modelling in R

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• harrelfe/Hmisc

  Harrell Miscellaneous

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• dynverse/dynbenchmark

  Comparison of methods for trajectory inference on single-cell data 🥇

  Language:R191161339

• yanlinlin82/ggvenn

  Venn Diagram by ggplot2, with really easy-to-use API.

  Language:R16673725

• carlganz/rintrojs

  Wrapper for the Intro.js library

  Language:R131105711

• parklab/NGSCheckMate

  Software program for checking sample matching for NGS data

  Language:Python122124447

• maximilianh/cellBrowser

  main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org

  Language:JavaScript1041221340

• vanallenlab/comut

  CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots

  Language:Python8781826

• PoisonAlien/TCGAmutations

  R data package for pre-compiled somatic mutations from TCGA cohorts (from Broad Firehose and TCGA MC3 Project)

  Language:R8251524

• transmart/transmartApp

  tranSMART is a knowledge management platform that enables scientists to develop and refine research hypotheses by investigating correlations between genetic and phenotypic data, and assessing their analytical results in the context of published literature and other work.

  Language:JavaScript7136074

• cancerit/ascatNgs

  Somatic copy number analysis using WGS paired end wholegenome sequencing

  Language:Perl68178617

• Bioconductor/OrchestratingSingleCellAnalysis

  Content for the OSCA Book.

  Language:Dockerfile6583336

• ggjlab/scMCA

  Mouse cell atlas

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• mani2012/BatchQC

  Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.

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• MangoTheCat/dtdbshiny

  Shiny app demo of database bulk update and inline editing

  Language:R297422

• cit-bioinfo/BLCAsubtyping

  Transcriptomic tools to classify bladder tumours according to six published molecular classifications : Baylor, UNC, MDA, Lund, CIT-Curie, TCGA

  Language:R24427

• francescojm/ADAM

  Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens

  Language:R22303

• WormBase/wormbase-pipeline

  Wormbase Build Pipeline

  Language:Perl221919713

• dynverse/dynguidelines

  Selecting the optimal trajectory inference based on a given dataset and user input 🔮

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• broadinstitute/DLBCL_Nat_Med_April_2018

  Language:R123507

• maycuiyan/deep-survival-model

  Tensorflow & Keras implementation of building deep survival models with multiple gene expression datasets

  Language:Python9013

• inab/SmartRNASeqCaller

  SmartRNASeqCaller is a post-processing pipeline to improve germline variant calling from RNA-Seq data

  Language:Python76113

• covingto/pancanmafmerge

  A repo for code specifically tailored to the merger of the TCGA PanCan VCF (per-caller) files into a MAF file. This repository borrows from code available in other repositories and has some custom code to handle the merger. The project's main purpose is simply to do the merge for this one project and therefore has no features to make it more generic or maintainable beyond this goal.

  Language:Python6494