noporpoise

noporpoise's Stars

• eriklindernoren/ML-From-Scratch

  Machine Learning From Scratch. Bare bones NumPy implementations of machine learning models and algorithms with a focus on accessibility. Aims to cover everything from linear regression to deep learning.

  Language:Python23.9k938704.6k

• AtsushiSakai/PythonRobotics

  Python sample codes for robotics algorithms.

  Language:Python23k5123536.5k

• karpathy/minbpe

  Minimal, clean code for the Byte Pair Encoding (BPE) algorithm commonly used in LLM tokenization.

  Language:Python9.1k8336838

• ossu/bioinformatics

  :microscope: Path to a free self-taught education in Bioinformatics!

  5.4k36424901

• ThousandBirdsInc/chidori

  A reactive runtime for building durable AI agents

  Language:Rust1.3k19850

• pdfernhout/High-Performance-Organizations-Reading-List

  Ideas for creating and sustaining high performance organizations

  1.2k34452

• DerrickWood/kraken2

  The second version of the Kraken taxonomic sequence classification system

  Language:C++71329828271

• cooplab/popgen-notes

  Population genetics notes

  Language:PostScript638508130

• skovaka/UNCALLED

  Raw nanopore signal mapper that enables real-time targeted sequencing

  Language:C++520135744

• armon/hlld

  C network daemon for HyperLogLogs

  Language:C44927141

• marbl/Mash

  Fast genome and metagenome distance estimation using MinHash

  Language:C++3863316591

• broadinstitute/pilon

  Pilon is an automated genome assembly improvement and variant detection tool

  Language:Scala3403017060

• philres/ngmlr

  NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

  Language:C++289229840

• slackapi/Slack-Python-Onboarding-Tutorial

  a simple python onboarding bot and tutorial for Slack

  Language:Python2511512170

• pmelsted/bifrost

  Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs

  Language:C++203127225

• lbcb-sci/racon

  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

  Language:C++199126034

• rrwick/Long-read-assembler-comparison

  Benchmarking of long-read assembly tools for bacterial whole genomes

  Language:Python17015414

• Phelimb/BIGSI

  BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data

  Language:Python124192813

• lh3/bgt

  Flexible genotype query among 30,000+ samples whole-genome

  Language:C96161610

• molbio-dresden/flexidot

  Highly customizable, ambiguity-aware dotplots for visual sequence analyses

  Language:Python9051216

• splatlab/squeakr

  Squeakr: An Exact and Approximate k -mer Counting System

  Language:C++8584023

• rrwick/Minipolish

  A tool for Racon polishing of miniasm assemblies

  Language:Python728117

• rrwick/Assembly-Dereplicator

  A tool for removing redundant genomes from a set of assemblies

  Language:Python678110

• brentp/indelope

  find large indels (in the blind spot between GATK/freebayes and SV callers)

  Language:Nim39961

• splatlab/debgr

  deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph

  Language:C++30901

• kuleshov/architect

  Scaffolding genomes using synthetic long read clouds

  Language:Python20531

• lexnederbragt/INF-BIOx121_fall2014_de_novo_assembly

  20605

• jeromekelleher/python-c-api-demo

  A demo of the Python C API for CodeMonkeys

  Language:C19602

• hanfang/Topsorter

  Graphical assessment of structrial variants using 10x genomics data

  Language:Python10642

• curative/oatmeal-protocol

  Control and communicate with Arduino devices from Python

  Language:C++3410