smarco/WFA2-lib

Issues

• omp.h still required when invoking -DOPENMP=FALSE in CMake build

  #95 opened 5 months ago by rlorigro
  1

• rust crate libwfa

  #98 opened 5 months ago by hangsuUNC
  11

• Memory issues with WFA2 and BiWFA while processing millions of paired alignments

  #97 opened 5 months ago by GSbioinfo
  0

• A few questions about my application (changing attributes, ultralow endsfree, endsfree API, max_score heuristics)

  #93 opened 7 months ago by feldroop
  3

• About how wavefront offsets are saved

  #94 opened 7 months ago by shenwei356
  5

• wfa2 crashes on ends-free alignment with the following options and the three sequences aligned one after another

  #86 opened 8 months ago by iAvicenna
  3

• Uninitialized values leads to non-deterministic alignment results

  #87 opened 9 months ago by ctsa
  2

• fatal error: 'endian.h' file not found on M1 mac

  #88 opened 9 months ago by rlorigro
  5

• Uninitialized offset can lead to client segfault

  #84 opened a year ago by ctsa
  2

• Hamming distance

  #36 opened 2 years ago by yunfeiguo
  2

• WFA2-lib for local alignment

  #61 opened 2 years ago by aa25desh
  1

• Segmentation Fault with memory_mode != high

  #30 opened a year ago by h-2
  3

• Feature requests: R bindings and early stopping

  #80 opened a year ago by traversc
  1

• Consider following semantic versioning

  #82 opened a year ago by twrightsman
  2

• Right score for score-only alignment?

  #81 opened a year ago by haojingshao
  2

• Please support big-endian architectures

  #79 opened a year ago by vpa1977
  3

• Generate Dataset Tool outdated README

  #78 opened a year ago by Andreu-Roca
  1

• Valgrind uninitialized value errors

  #76 opened a year ago by ctsa
  6

• Possible bug in ends-free score calculation when match < 0

  #73 opened a year ago by ctsa
  3

• Broken build with OMP enabled

  #67 opened 2 years ago by pettyalex
  1

• Memory usage for ultra long read alignment

  #65 opened 2 years ago by Daniel-Liu-c0deb0t
  6

• VERSION file breaks vcflib build on Mac

  #62 opened 2 years ago by adamnovak
  1

• Small typo in WFA paper

  #24 opened 2 years ago by RagnarGrootKoerkamp
  5

• Safe to change parameters between uses of aligner object?

  #60 opened 2 years ago by brendanf
  1

• Which CIGAR is returned when multiple alignments have equal scores?

  #59 opened 2 years ago by brendanf
  3

• [WFA::Compute] Maximum allocated wavefronts reached

  #39 opened 2 years ago by RolandFaure
  14

• Diffuculty building correctly

  #56 opened 2 years ago by iAvicenna
  8

• Adding -lrt in case "librt.so.1: error adding symbols: DSO missing from command line"

  #33 opened 2 years ago by ksahlin
  1

• wf_aligner->cigar->operations is blank

  #34 opened 2 years ago by lpipes
  12

• Feature questions

  #12 opened 2 years ago by rmhubley
  3

• Retrieving the extent of an alignment

  #47 opened 2 years ago by marcelm
  0

• Do D and I have inverted roles in CIGAR strings?

  #46 opened 2 years ago by marcelm
  4

• Dual-cost gap-affine distances with gap opening penalty = 0

  #52 opened 2 years ago by RolandFaure
  2

• Problem getting rust bindings to build

  #53 opened 2 years ago by wdecoster
  4

• How to control the primary orientation of the alignment?

  #37 opened 2 years ago by y9c
  1

• Please tag releases

  #40 opened 2 years ago by tillea
  5

• Difference between GapAffine(1,1,1) and EditDistance

  #51 opened 2 years ago by RolandFaure
  2

• Tag versionin

  #50 opened 2 years ago by tbrekalo
  1

• WFA2-lib commons.h bleeds C macros

  #35 opened 2 years ago by pjotrp
  5

• Alignment with match score not optimal

  #26 opened 2 years ago by wongs2
  4

• how to use extension

  #18 opened 3 years ago by brentp
  7

• Rust bindings and sign of returned score

  #22 opened 2 years ago by RagnarGrootKoerkamp
  3

• Score is `-INF` when aligning two empty sequences

  #23 opened 2 years ago by RagnarGrootKoerkamp
  2

• Unexpected alignment failures

  #21 opened 2 years ago by h-2
  5

• ends-free match score not used

  #19 opened 2 years ago by wongs2
  2

• [questions] benchmarks; scores VS penalties

  #20 opened 2 years ago by h-2
  3

• left shift of negative value

  #17 opened 3 years ago by armintoepfer
  1

• EXC_BAD_ACCESS

  #16 opened 3 years ago by armintoepfer
  12

• Speed up WFA when two sequences differ greatly in length

  #13 opened 3 years ago by lh3
  3

• Bug in overloaded WFAligner::alignEndsFree()

  #11 opened 3 years ago by maxbbbb
  1