snakemake/snakemake-github-action

Issues

• Bug: conda is not properly installed with v8.0.1 (stable) docker build

  #37 opened a year ago by ezherman
  6

• Workflow defines configfile config/config.yml but it is not present or accessible.

  #22 opened 3 years ago by Ulthran
  4

• Feature request: Option to make failure == success

  #30 opened a year ago by hepcat72
  0

• How to detect if steps would hang

  #29 opened 2 years ago by hepcat72
  0

• Is `--kubernetes` flag an option?

  #28 opened 2 years ago by jairav
  1

• Use snakemake conda envs with GitHub Actions/cache

  #26 opened 2 years ago by lczech
  2

• How to save output of list-untracked

  #27 opened 2 years ago by hepcat72
  0

• Save png of DAG using this action

  #3 opened 5 years ago by colinbrislawn
  1

• Unable to find Snakefile

  #25 opened 2 years ago by pschloss
  1

• How to update environment dependencies?

  #24 opened 2 years ago by matinnuhamunada
  0

• configure strict priorities by executing conda config --set channel_priority strict

  #23 opened 3 years ago by seb-mueller
  2

• Containerize Fails with Conda Envs

  #17 opened 3 years ago by mfansler
  1

• possibility to set snakemake version

  #21 opened 3 years ago by Smeds
  0

• Unable to find version `v1`

  #15 opened 3 years ago by mfansler
  1

• Snakemake `--generate-unit-tests` system breaks relative paths

  #18 opened 3 years ago by G-kodes
  0

• Flag --use-singularity

  #9 opened 4 years ago by marrip
  7

• update README

  #12 opened 4 years ago by Adrian-Cantu
  0

• snakemake: command not found in v1.4.0

  #1 opened 5 years ago by sk-sahu
  1