ssun1116
M.S. interested in bioinformatics. Special interest in elucidating neurodevelopment and neurodegeneration through large-scale integration of single-cell data.
Joon An Lab, Korea UniversitySeoul, Korea
ssun1116's Stars
romkatv/powerlevel10k
A Zsh theme
cxli233/FriendsDontLetFriends
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
OpenGene/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
aertslab/pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
liyu95/Deep_learning_examples
Examples of using deep learning in Bioinformatics
theislab/scarches
Reference mapping for single-cell genomics
morris-lab/CellOracle
This is the alpha version of the CellOracle package
Teichlab/celltypist
A tool for semi-automatic cell type classification
sortmerna/sortmerna
SortMeRNA: next-generation sequence filtering and alignment tool
igordot/genomics
A collection of scripts and notes related to genomics and bioinformatics
theislab/diffxpy
Differential expression analysis for single-cell RNA-seq data.
saezlab/decoupler-py
Python package to perform enrichment analysis from omics data.
dpeerlab/SEACells
SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data
swolock/scrublet
Detect doublets in single-cell RNA-seq data
hoelzer-lab/rnaflow
A simple RNA-Seq differential gene expression pipeline using Nextflow
jzhoulab/puffin
deep learning-inspired explainable sequence model for transcription initiation
tanaylab/metacells
Metacells - Single-cell RNA Sequencing Analysis
JonathanShor/DoubletDetection
Doublet detection in single-cell RNA-seq data.
neurogenomics/MAGMA_Celltyping
Find causal cell-types underlying complex trait genetics
ChangLabSNU/PaperSorter
Sends alerts to a Slack channel for potentially interesting new articles selected from RSS feeds.
netbiolab/scHumanNet
Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
canceromics/MeRIPseqPipe
MeRIPseqPipe:An integrated analysis pipeline for MeRIP-seq data based on Nextflow.
linnarsson-lab/developing-human-brain
theislab/Covid_meta_analysis
Analysis notebooks for the Covid-19 meta analysis that accompanies the Nature Medicine publication "Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics"
mathyslab7/ROSMAP_snRNAseq_PFC
AllenInstitute/BICCN_M1_Evo
Analysis for BICCN cross-species primary motor cortex project
lazyky/meripseqpipe
MeRIP-seq analysis pipeline arranged multiple alignment tools, peakCalling tools, Merge Peaks' methods and methylation analysis methods.
velmeshevlab/dev_hum_cortex
jahanzebsaqib/NicheSVM-GUI
robertaboukhalil/oct4th
CLI for converting CSV/TSV files to Excel spreadsheets without mangling gene names