tianxiongbb

tianxiongbb's Stars

• home-assistant/core

  :house_with_garden: Open source home automation that puts local control and privacy first.

  Language:Python72.6k1.3k52.9k30.4k

• jekyll/jekyll

  :globe_with_meridians: Jekyll is a blog-aware static site generator in Ruby

  Language:Ruby49.1k1.4k4.8k10k

• vim/vim

  The official Vim repository

  Language:Vim Script36.4k6738.3k5.4k

• fchollet/deep-learning-with-python-notebooks

  Jupyter notebooks for the code samples of the book "Deep Learning with Python"

  Language:Jupyter Notebook18.6k6521858.6k

• mamba-org/mamba

  The Fast Cross-Platform Package Manager

  Language:C++6.8k461.8k353

• alexdobin/STAR

  RNA-seq aligner

  Language:C1.8k852k506

• lh3/minimap2

  A versatile pairwise aligner for genomic and spliced nucleotide sequences

  Language:C1.8k861.1k409

• deeptools/pyGenomeTracks

  python module to plot beautiful and highly customizable genome browser tracks

  Language:Python76230209111

• jts/nanopolish

  Signal-level algorithms for MinION data

  Language:C++564361k159

• kundajelab/dragonn

  A toolkit to learn how to model and interpret regulatory sequence data using deep learning.

  Language:Jupyter Notebook254263271

• PacificBiosciences/pbbioconda

  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.

  2512970144

• genome-in-a-bottle/giab_data_indexes

  This repository contains data indexes from NIST's Genome in a Bottle project.

  Language:Roff235153170

• rajewsky-lab/mirdeep2

  Discovering known and novel miRNAs from small RNA sequencing data

  Language:Perl1351611949

• bowhan/piPipes

  piRNA pipeline collection developed in the Zamore Lab and ZLab in UMass Med School

  Language:HTML5693140

• t-neumann/slamdunk

  Streamlining SLAM-seq analysis with ultra-high sensitivity

  Language:Python37515022

• weng-lab/TEMP2

  Algorithm to detect germline and de novo transposon insertions

  Language:Shell266276

• JialiUMassWengLab/TEMP

  TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing data

  Language:Perl2171519

• tianxiongbb/piSet

  Language:C++8011

• awgg-lab/australasiangenomes

  Genomic data repository for the Threatened Species Initiative and the ARC Centre for Innovations in Peptides and Protein Science

  41

• tianxiongbb/piFinder

  Language:Shell3100

• weng-lab/atacseq-workflow

  The ENCODE DCC ATAC-seq pipeline, adapted for Krews

  Language:Python31802