vaquerizaslab/fanc

Issues

• ZeroDivisionError: division by zero

  #200 opened a month ago by 80QvQ08
  2

• Bias vector

  #165 opened a year ago by nponts
  5

• How to calculate the loop strength of APA plot ?

  #199 opened 2 months ago by nieyage
  1

• fanc loops error with .mcool file

  #198 opened 4 months ago by wangmhan
  0

• Merging pairs files from biological replicate

  #197 opened 4 months ago by Knetsy
  0

• illegal hardware instruction fanc –version

  #196 opened 5 months ago by hd931
  0

• The command fanc compartments -r 5 encountered an error

  #195 opened 5 months ago by LHXqwq
  0

• auto.py index out of range

  #172 opened 5 months ago by alphataubio
  1

• How to do plotting.TriangularMatrixPlot without ice balancing

  #194 opened 5 months ago by WenfanKK
  1

• Wrong name for parameter ylim

  #193 opened 5 months ago by joshuak94
  0

• Specific package versions for matplotlib and pandas?

  #192 opened 6 months ago by joshuak94
  1

• Fanc insulation hangs?

  #191 opened 6 months ago by gdolsten
  0

• Statistical methods employed comparing insulation scores

  #190 opened 7 months ago by luzporras
  1

• Load .insulation file (File type not recognised)

  #189 opened 8 months ago by Nicolas-Py
  0

• Problem with fanc auto

  #188 opened 8 months ago by CStehn
  0

• Is it possible A/B compartment analysis entire genome

  #187 opened 8 months ago by 13061994
  0

• cooler version difference in parameters

  #186 opened 9 months ago by NMaziak
  2

• fanc boundaries: AttributeError: 'Bed' object has no attribute 'close'

  #183 opened 9 months ago by prometheusloong
  2

• fancplot layer: AttributeError: 'Bed' object has no attribute '_parameters'

  #185 opened 9 months ago by jmsanper
  1

• hic files format after the fanc auto pipeline

  #184 opened 9 months ago by Knetsy
  1

• Issue with installation

  #182 opened 10 months ago by rlowe-altoslabs
  2

• is it SAM/BAM format?

  #181 opened 10 months ago by gorliver
  0

• Per chromosome compartment strength with different eigenvectors

  #180 opened a year ago by nponts
  2

• How to retrieve and save the compartment domain and values in python API

  #177 opened a year ago by caragraduate
  1

• 'Figure' object has no attribute 'draw_without_rendering'

  #179 opened a year ago by AlcaArctica
  2

• Issue with fancplot

  #178 opened a year ago by TomSexton00
  4

• FANC aggregate generates weird results

  #152 opened a year ago by wangfuzhou110
  1

• Handling 4DN .mcool files

  #176 opened a year ago by wangfuzhou110
  0

• fanc compare return invalid value encountered in double_scalars

  #175 opened a year ago by BenxiaHu
  0

• Cleaning by removing 'Dangling ends' fragments only?

  #164 opened a year ago by yermek2030
  7

• Clarification on matrix weights, scaling, and visualization in the context of `fanc compare`

  #171 opened a year ago by kalavattam
  3

• Guidance on identifying and masking specific bins before balancing using FAN-C Python API

  #173 opened a year ago by kalavattam
  0

• Issue with log transformation in `fancplot -p square`

  #174 opened a year ago by kalavattam
  0

• Problem with `region` in `fanc/bin/fancplot`

  #170 opened a year ago by kalavattam
  3

• WARNING Cannot find normalisation 'XXX'

  #169 opened a year ago by moxqiang
  3

• Runtime Error ("Task {} had non-zero exit status.") error with fanc auto

  #168 opened a year ago by crxbun
  10

• fanc load for customized .hic file

  #167 opened a year ago by caragraduate
  3

• ValueError: not enough values to unpack

  #166 opened a year ago by nieyage
  1

• Duplicated rows in the TAD boundary file given by fac boundaries

  #163 opened a year ago by ziyin96
  4

• Dispersed bin squares in Saddle plots for individual chromosomes

  #162 opened a year ago by yermek2030
  6

• fanc aggregate data

  #160 opened a year ago by shinohara-xiao
  2

• TestReadPairs.test_select fails

  #161 opened a year ago by rekado
  0

• fanc auto ERROR: bowtie2 must be in PATH or defined on config file for mapping!

  #159 opened a year ago by shinohara-xiao
  1

• whole genome matrix

  #158 opened 2 years ago by LindaJadeC
  0

• About fanc insulation command

  #157 opened 2 years ago by DontCareYaYa
  0

• About output of observed/expected matrix value

  #156 opened 2 years ago by DontCareYaYa
  2

• fancplot / -region parameter : KeyError

  #155 opened 2 years ago by matteozoia4
  8

• fanc map multi-threads and memory issue

  #154 opened 2 years ago by xunchen85
  4

• missing reads region has valid insulation score

  #153 opened 2 years ago by caragraduate
  4

• unpack requires a buffer of 4 bytes

  #151 opened 2 years ago by LMH0066
  6