weir12

weir12's Stars

• PaddlePaddle/PaddleNLP

  👑 Easy-to-use and powerful NLP and LLM library with 🤗 Awesome model zoo, supporting wide-range of NLP tasks from research to industrial applications, including 🗂Text Classification, 🔍 Neural Search, ❓ Question Answering, ℹ️ Information Extraction, 📄 Document Intelligence, 💌 Sentiment Analysis etc.

  Language:Python12.2k1053.6k2.9k

• houtianze/bypy

  Python client for Baidu Yun (Personal Cloud Storage) 百度云/百度网盘Python客户端

  Language:Python8k2965841.4k

• shibing624/text2vec

  text2vec, text to vector. 文本向量表征工具，把文本转化为向量矩阵，实现了Word2Vec、RankBM25、Sentence-BERT、CoSENT等文本表征、文本相似度计算模型，开箱即用。

  Language:Python4.5k31150403

• satijalab/seurat

  R toolkit for single cell genomics

  Language:R2.3k748k918

• scverse/scvi-tools

  Deep probabilistic analysis of single-cell and spatial omics data

  Language:Python1.3k261k356

• jts/nanopolish

  Signal-level algorithms for MinION data

  Language:C++569361k159

• aristoteleo/dynamo-release

  Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

  Language:Python4241025759

• theislab/scvelo

  RNA Velocity generalized through dynamical modeling

  Language:Python41913800103

• nanoporetech/bonito

  A PyTorch Basecaller for Oxford Nanopore Reads

  Language:Python39635340122

• gao-lab/GLUE

  Graph-linked unified embedding for single-cell multi-omics data integration

  Language:Python386812257

• msamogh/nonechucks

  Deal with bad samples in your dataset dynamically, use Transforms as Filters, and more!

  Language:Python37833227

• theislab/cellrank

  CellRank: dynamics from multi-view single-cell data

  Language:Python352871946

• menghaowei/ngs_learning

  生物信息学交流资料

  24632047

• velocyto-team/velocyto.py

  RNA velocity estimation in Python

  Language:Python1601337483

• hasindu2008/f5c

  Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)

  Language:C144710226

• zhulf0804/Inceptionv4_and_Inception-ResNetv2.PyTorch

  A PyTorch implementation of Inception-v4 and Inception-ResNet-v2.

  Language:Python1123038

• WGLab/DeepMod

  DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications

  Language:Python10256035

• hyeshik/sars-cov-2-transcriptome

  Supplemental code for "the architecture of SARS-CoV-2 transcriptome" paper

  Language:Jupyter Notebook999423

• JinmiaoChenLab/GraphST

  Language:Python9233814

• almaan/stereoscope

  Spatial mapping of cell types by integration of transcriptomics data

  Language:Python8943824

• tleonardi/nanocompore

  RNA modifications detection from Nanopore dRNA-Seq data

  Language:Python80915712

• epi2me-labs/wf-transcriptomes

  Language:Nextflow76812132

• adnaniazi/tailfindr

  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.

  Language:R5337318

• uhlerlab/cross-modal-autoencoders

  Language:Python53239

• bowang-lab/DeepVelo

  Language:Python47789

• weir12/DENA

  Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.

  Language:Python223235

• msmdev/pyGPCCA

  pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state models.

  Language:Python212204

• weir12/DeepEdit

  DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing

  Language:Python15181

• weir12/cellrank

  CellRank for directed single-cell fate mapping

  Language:Python1000

• weir12/spatialID

  Language:Python1000