mikolmogorov/Flye
De novo assembler for single molecule sequencing reads using repeat graphs
CNOASSERTION
Pinned issues
Issues
- 0
How to adjust parameters
#728 opened by hanxintong5887 - 2
OSError: AF_UNIX path too long
#727 opened by buchanri - 7
ERROR: Can't identify input file type
#719 opened by DaRinker - 1
- 2
--polish-target has reduced N50 and largest contig
#723 opened by lilypeck - 3
question: min coverage trimming?
#726 opened by kevfengler227 - 1
Core dump with Python 3.9
#722 opened by tnn111 - 2
- 1
Flye does not continue into consensus stage
#720 opened by Niels1804 - 1
Nanopore Long Read Assembly: Stuck on Polishing Stage, No Eukaryotic Organism Represented
#718 opened by Tpowell7 - 2
assembly graph with several collapse contigs
#716 opened by pguenzi-tiberi - 2
Conda installation
#712 opened by Narmatha99 - 1
Missing & misassembled plasmids
#706 opened by peradastra - 11
Correcting bubbles step crash
#702 opened by mprous1 - 1
problem in opening GFA
#717 opened by lfaino - 1
fastq format error
#715 opened by yamkela-mg - 4
thread exception - system ran out of memory
#710 opened by samuelmontgomery - 4
A couple of installation issues.
#703 opened by l-yampolsky - 3
Merge dip_polish branch to mainstream
#695 opened by mp15 - 1
installation error flye.six.moves
#714 opened by anke-king - 2
- 2
Suggestions on using --keep haplotypes
#709 opened by riyasj327 - 1
Should I filter based on quality ONT 10.4.1 simplex reads before using --nano-hq?
#705 opened by SonjaKersten - 1
No disjointigs were assembled - please check if the read type and genome size parameters are correct
#708 opened by lqhungpt - 4
Stuck in repeat stage for low coverage sample
#707 opened by JWDebler - 4
Flye reported an error
#700 opened by HHHHerbs - 1
assembly error No disjointigs were assembled
#704 opened by isabelluo - 1
- 2
- 2
- 17
- 1
- 1
Samtools Library Issues
#699 opened by schmigle - 4
- 1
The question after #683
#697 opened by Jerry-is-a-mouse - 7
- 7
Anomaly in resource usage
#687 opened by VendelboNM - 4
Can't resume from a definite polishing step ?
#689 opened by ImagoXV - 1
- 1
- 1
flye usage
#690 opened by emilydolivo97 - 1
What parameter for R10.4.1 FAST mode data
#688 opened by LogCrab - 3
corrupted double-linked list
#682 opened by grinning-bat - 1
Metagenome
#681 opened by joao1980 - 2
Flye output only 1 contig
#675 opened by LaurenBaena - 6
Best parameter for nanopore R9
#679 opened by JMencius - 1
direct RNA Seq data with flye?
#680 opened by Viola-TA - 3
How does Flye resolve 'unbridged' repeats?
#677 opened by Matteo-Paini - 0
No disjointigs were assembled(WARNING: No overlaps found - unable to estimate parameters)
#678 opened by ChloeXUAN1 - 2