Pinned Repositories
agilo-hooks
Modification to the default post-commit hooks in agilo (http://agile42.com/cms/pages/agilo/) to support multi-repositories. Parts of this patch were submitted as https://dev.agile42.com/ticket/1086
joshmoore.github.io
Personal pages
NGFF-GBI-2022-Workshop
See https://twitter.com/GlobalBioImage/status/1506593753431216130
omero-server-docker
OMERO.server production docker image
omero-web-docker
OMERO.web production docker image
openmicroscopy
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
design
OME Design proposals
openmicroscopy
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
zarr-python
An implementation of chunked, compressed, N-dimensional arrays for Python.
joshmoore's Repositories
joshmoore/NGFF-GBI-2022-Workshop
See https://twitter.com/GlobalBioImage/status/1506593753431216130
joshmoore/openmicroscopy
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
joshmoore/bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
joshmoore/ome-documentation
Sphinx-based documentation for the Open Microscopy Environment
joshmoore/omero-cli-transfer
An OMERO CLI plugin for creating transfer packets between OMERO servers.
joshmoore/omero-scripts
Extracted OmeroPy/scripts directory for local modifications.
joshmoore/.github
joshmoore/bio-formats-build
Bio-Formats top-level build for all components
joshmoore/bio-formats-documentation
Bio-Formats documentation
joshmoore/bioformats2raw
Bio-Formats whole slide imaging to raw format converter
joshmoore/bioimagebook.github.io
An introduction to bioimage analysis - http://bioimagebook.github.io
joshmoore/cf-conventions
AsciiDoc Source
joshmoore/community-docs
docs.ansible.com/community
joshmoore/deepcell-tf
Deep Learning Library for Single Cell Analysis
joshmoore/deployment
Deployment infrastructure for the Image Data Resource
joshmoore/dtqueries
(Dev site) Demonstration of Linked Data queries for the ΔTissue project.
joshmoore/imagej_omero_extensions
joshmoore/intellij-settings
https://www.jetbrains.com/help/idea/sharing-your-ide-settings.html#settings-repository
joshmoore/napari.github.io
website for the napari image viewer
joshmoore/ngff-roadmap-draft
Example of using the new projects as a roadmap for NGFF development.
joshmoore/numcodecs-feedstock
A conda-smithy repository for numcodecs.
joshmoore/ome-zarr-metadata
ome-zarr extension for parsing metadata
joshmoore/omero-blitz
Gradle project containing Ice remoting code for OMERO
joshmoore/omero-cli-render
joshmoore/omero-prometheus-tools
Utilities for monitoring OMERO with Prometheus
joshmoore/omero-test-infra
Test infrastructure for decoupled repositories
joshmoore/omero_search_engine
App which is used to search metadata (key-value pairs)
joshmoore/OpenMicroscopy-1
Non-comprehensive list of projects and resources related to open microscopy.
joshmoore/rdflib
RDFLib is a Python library for working with RDF, a simple yet powerful language for representing information.
joshmoore/zarr-logo
Official logos for the Zarr project