popodras

popodras's Stars

• Kanaries/pygwalker

  PyGWalker: Turn your pandas dataframe into an interactive UI for visual analysis

  Language:Python13.8k82223723

• facebookresearch/esm

  Evolutionary Scale Modeling (esm): Pretrained language models for proteins

  Language:Python3.4k65320661

• OpenGene/fastp

  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

  Language:C++2k51531334

• MultiQC/MultiQC

  Aggregate results from bioinformatics analyses across many samples into a single report.

  Language:JavaScript1.3k351.7k608

• sokrypton/ColabDesign

  Making Protein Design accessible to all via Google Colab!

  Language:Python6642975153

• TACC/Lmod

  Lmod: An Environment Module System based on Lua, Reads TCL Modules, Supports a Software Hierarchy

  Language:Lua51322508129

• msambol/dsa

  Data structures and algorithms in X minutes. Code examples from my YouTube channel.

  Language:Python49477105

• s-andrews/FastQC

  A quality control analysis tool for high throughput sequencing data

  Language:Java4691313086

• hyattpd/Prodigal

  Prodigal Gene Prediction Software

  Language:C460259985

• wdecoster/NanoPlot

  Plotting scripts for long read sequencing data

  Language:Python4511235448

• Kanaries/GWalkR

  Turn your data frame into a tableau style drag and drop UI interface to build visualization in R.

  Language:TypeScript443122343

• isovic/racon

  Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116 Note: This was the original repository which will no longer be officially maintained. Please use the new official repository here:

  Language:C++2762223550

• wdecoster/nanofilt

  Filtering and trimming of long read sequencing data

  Language:Python197105814

• wdecoster/chopper

  Language:Rust16173313

• brentp/jigv

  igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"

  Language:Nim1263217

• OpenGene/fastplong

  Ultra-fast preprocessing and quality control for long-read sequencing data

  Language:C++95964

• KolmogorovLab/hapdup

  Pipeline to convert a haploid assembly into diploid

  Language:Python9444711

• nf-core/differentialabundance

  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

  Language:Nextflow6915018341

• nf-core/proteinfold

  Protein 3D structure prediction pipeline

  Language:Nextflow681638645

• nf-core/airrflow

  B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework

  Language:Nextflow571509238

• s-andrews/sradownloader

  A script to make downloading of SRA/GEO data easier

  Language:Python316229

• epi2me-labs/wf-template

  Nextflow workflow template repository

  Language:Python163532

• wilkelab/DSC385

  Language:HTML162110

• nf-core/pathogensurveillance

  Surveillance of pathogens using population genomics and sequencing

  Language:Nextflow151691206

• seqeralabs/nf-dragen

  POC Nextflow pipeline to run Illumina DRAGEN software

  Language:Nextflow11606

• pha4ge/primer-schemes

  Tiling PCR primer scheme definitions

  105234

• WCSCourses/GSBAfrica2023

  GSBAfrica course manual site

  7219

• nf-core/drugresponseeval

  Pipeline for testing drug response prediction models in a statistically and biologically sound way.

  Language:Nextflow620482

• pha4ge/minimal-pathogen-agnostic-contextual-data-specification

  An international minimal metadata standard for public health and One Health genomic surveillance.

  5503

• MSDLLCpapers/mRNAid

  Language:Python4101