sestaton

sestaton's Stars

• kevinblighe/EnhancedVolcano

  Publication-ready volcano plots with enhanced colouring and labeling

  Language:R4181212683

• lh3/miniprot

  Align proteins to genomes with splicing and frameshift

  Language:C34186218

• kevinblighe/PCAtools

  PCAtools: everything Principal Components Analysis

  Language:R338146166

• marbl/merqury

  k-mer based assembly evaluation

  Language:Shell2981114721

• rolkra/explore

  R package that makes basic data exploration radically simple (interactive data exploration, reproducible data science)

  Language:R218112425

• ChiLiubio/microeco

  An R package for data analysis in microbial community ecology

  Language:R216339263

• jsh58/Genrich

  Detecting sites of genomic enrichment

  Language:C1901011327

• DecodeGenetics/graphtyper

  Population-scale genotyping using pangenome graphs

  Language:C++1771012120

• molgenis/systemsgenetics

  Generic Java genotype reader / writer, QTL mapping software, Strand alignment tool

  Language:Java1724795100

• baoxingsong/AnchorWave

  Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation

  Language:C++15886120

• lh3/psmc

  Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model

  Language:C158196060

• yfukasawa/LongQC

  LongQC is a tool for the data quality control of the PacBio and ONT long reads.

  Language:C15417619

• ShixiangWang/sigminer

  🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html

  Language:R150235019

• BGI-shenzhen/LDBlockShow

  LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

  Language:Perl14754541

• mortazavilab/TALON

  Technology agnostic long read analysis pipeline for transcriptomes

  Language:Python138614630

• abacus-gene/paml

  PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **technical issues** on this repository (e.g., compiling, programs abort, etc.). Problems with input data (e.g., error/warning messages) & general questions should be posted at https://groups.google.com/g/pamlsoftware?pli

  Language:C13595323

• SunPengChuan/wgdi

  WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes

  Language:Python13035323

• marbl/meryl

  A genomic k-mer counter (and sequence utility) with nice features.

  Language:C124114914

• WGLab/NanoCaller

  Variant calling tool for long-read sequencing data

  Language:Python10210488

• vgl-hub/gfastats

  A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulation.

  Language:C++965259

• colindaven/awesome-pangenomes

  A list of software for pangenomics

  935317

• Nextomics/NextPolish2

  Repeat-aware polishing genomes assembled using HiFi long reads

  Language:Rust765263

• DyogenIBENS/Agora

  Algorithm For Gene Order Reconstruction in Ancestors

  Language:Python7184115

• xihaoli/STAARpipeline

  An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline

  Language:R6182220

• cumc/xqtl-protocol

  Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium

  Language:Jupyter Notebook42526545

• mccoy-lab/MAGE

  Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discovery and annotation.

  Language:R32403

• hemstrow/snpR

  Language:R293227

• USDA-ARS-GBRU/PanPipes

  Test sets and pipeline scripts for pan-genomic graph analysis

  Language:Python16502

• popphylotools/HiMAP_v2

  Language:Python5323

• uperl/SQL-Formatter

  Format SQL using the rust sqlformat library

  Language:Perl210