soft-matter/pims

Issues

• difference between old and new cameras

  #459 opened a month ago by HoseynAAmiri
  10

• Reading Cine file

  #455 opened 2 months ago by HoseynAAmiri
  2

• Problem with cine.py

  #401 opened 3 years ago by malopez00
  4

• Possible to pickle / serialize the index for PyAVReaderIndexed

  #438 opened 7 months ago by MatusGasparik
  2

• Partial video frame reading becomes progressively slower

  #453 opened a year ago by KangByungwoo
  0

• loci_tools.jar missing

  #456 opened 7 months ago by bpavie
  1

• Video object returns array of zeros on second call

  #454 opened a year ago by EricThomson
  6

• massive regression in seek times

  #425 opened 2 years ago by bjarthur
  3

• pims.open fails to open a folder containing a single image using a glob pattern

  #452 opened a year ago by n-poulsen
  0

• pyav_reader.py: object has no attribute 'long_name' when trying to inspect 'frame'

  #451 opened a year ago by rodrigo-j-goncalves
  0

• Migration to GitHub actions needed

  #393 opened 3 years ago by nkeim
  1

• ImportError in Python 3.11 when importing dask_image.imread

  #449 opened a year ago by davedavemckay
  0

• pims.Video (PyAVReaderTimed backend) not closed by context manager

  #446 opened a year ago by EitanHemed
  0

• Failing tests in test_bioformats.py

  #416 opened a year ago by GenevieveBuckley
  7

• Failing tests on main branch

  #404 opened a year ago by GenevieveBuckley
  4

• PyAVReader can't work when num_workers is not set to 0

  #444 opened a year ago by huge3286
  0

• PyAV tests failing on main branch

  #414 opened a year ago by GenevieveBuckley
  2

• Vulnerabilities still unfixed

  #443 opened a year ago by Frank-Steiner
  1

• Speed up PyAVReaderIndexed toc building

  #442 opened a year ago by horsto
  0

• MNT: transition matplotlib code to set_layout_engine

  #429 opened 2 years ago by nkeim
  0

• Account for deprecation warnings in imageio

  #411 opened 2 years ago by tacaswell
  0

• PyAVReaderTimed returns same frame for two indexes and does not access last frame

  #440 opened 2 years ago by kvoit
  0

• Feature request: Reading niftis (.nii) and compressed nifti (.nii.gz)

  #439 opened 2 years ago by RobAnKo
  0

• pims.open(list_of_filenames) doesn't work

  #435 opened 2 years ago by anntzer
  0

• Support pathlib.Path inputs

  #436 opened 2 years ago by anntzer
  0

• latest PyAV breaks things

  #433 opened 2 years ago by kushalkolar
  0

• Problems opening a Nikon .nd2 file

  #432 opened 2 years ago by Clarion
  1

• loci_tools.jar issue

  #426 opened 2 years ago by perdigao1
  2

• link to example notebook is broken

  #418 opened 2 years ago by karchern
  1

• Dynamic concatenated pipeline

  #422 opened 2 years ago by jacopoabramo
  2

• Updated docs not published

  #419 opened 2 years ago by nkeim
  0

• pims Doesn't Recognize ImageIO in Conda Environment/Jupyter Notebook

  #409 opened 2 years ago by jmdelahanty
  1

• v0.6.0 gives error: NotImplementedError: Do not know how to deal with infinite readers

  #413 opened 2 years ago by fcakyon
  2

• cine.py broken by python 3.9+

  #402 opened 2 years ago by leonavery
  2

• Release for python 3.10

  #397 opened 2 years ago by ksunden
  2

• video.get_frame(1000) --> AttributeError: seek

  #405 opened 2 years ago by FlorMaye
  0

• Wrong JPype warning

  #384 opened 3 years ago by antonkulaga
  2

• Migration away from loci_tools.jar

  #400 opened 3 years ago by joshmoore
  0

• version check ?

  #398 opened 3 years ago by bjarthur
  3

• Image enhancement in PIMS frames

  #396 opened 3 years ago by medea95
  2

• please add file name as metadata

  #394 opened 3 years ago by alexlib
  2

• question on seq file from Norpix

  #388 opened 3 years ago by wAOndering
  1

• Nd2 image file reader - 'pyav_reader' problem

  #389 opened 3 years ago by gkanfer
  1

• Request : return list of supported Bioformats extensions

  #387 opened 3 years ago by b-grimaud
  1

• java.io.IOException: block[ 0 ] already removed

  #386 opened 3 years ago by antonkulaga
  1

• ImportError: cannot import name 'bioformats' from 'pims' (unknown location)

  #385 opened 3 years ago by ctpn
  4

• PyAVReaderTimed does not close container

  #382 opened 4 years ago by ellchow
  0

• Tests failing in docker container

  #379 opened 4 years ago by jthetzel
  0

• Docker build fails with conda permission error

  #377 opened 4 years ago by jthetzel
  1

• SequenceND

  #381 opened 4 years ago by Alfajesto
  0