yfukasawa

yfukasawa's Stars

• bcbio/bcbio-nextgen

  Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

  Language:Python994863.1k353

• fenderglass/Flye

  De novo assembler for single molecule sequencing reads using repeat graphs

  Language:C73928672161

• chhylp123/hifiasm

  Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

  Language:C++5633069189

• google-deepmind/alphamissense

  Language:Python53225069

• BioJulia/Bio.jl

  [DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia

  Language:Julia2624314463

• lbcb-sci/herro

  HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of >= 10 kbps is recommended).

  Language:Rust201154212

• ekimb/rust-mdbg

  minimizer-space de Bruijn graphs (mdBG) for whole genome assembly

  Language:Rust17682716

• smarco/WFA2-lib

  WFA-lib: Wavefront alignment algorithm library v2

  Language:C163156038

• baoxingsong/AnchorWave

  Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation

  Language:C++15786119

• Clinical-Genomics/scout

  VCF visualization interface

  Language:HTML153142.7k47

• clinfo/kGCN

  A graph-based deep learning framework for life science

  Language:Python11810633

• sanger-pathogens/assembly-stats

  Get assembly statistics from FASTA and FASTQ files

  Language:C++11618523

• PacificBiosciences/trgt

  Tandem repeat genotyping and visualization from PacBio HiFi data

  Language:Rust112305210

• PacificBiosciences/HiPhase

  Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads

  Language:Rust727384

• bwa-mem2/mm2-fast

  A versatile pairwise aligner for genomic and spliced nucleotide sequences

  Language:C51398

• wukevin/babel

  Deep learning model for single-cell inference of multi-omic profiles from a single input modality.

  Language:Jupyter Notebook3941316

• PacificBiosciences/pb-human-wgs-workflow-snakemake

  DEPRECATED - Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads

  Language:Python3856019

• amsession/Kmer-based-Subgenome-Mapping

  Language:R20145

• dsenalik/mitofy

  Fork of mitofy for linux web interface

  Language:Perl3103

• ken1roimai/MitoFates

  Prediction of mitochondrial targeting sequences and their cleavage sites

  Language:Perl1101