zezhuo

zezhuo's Stars

• just-the-docs/just-the-docs

  A modern, high customizable, responsive Jekyll theme for documentation with built-in search.

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• Granulate/gprofiler

  gProfiler is a system-wide profiler, combining multiple sampling profilers to produce unified visualization of what your CPU is spending time on.

  Language:Python7541719054

• sqjin/CellChat

  R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

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• vcftools/vcftools

  A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.

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• aertslab/SCENIC

  SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.

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• chris-mcginnis-ucsf/DoubletFinder

  R package for detecting doublets in single-cell RNA sequencing data

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• cellgeni/sceasy

  A package to help convert different single-cell data formats to each other

  Language:R37987655

• ncborcherding/scRepertoire

  A toolkit for single-cell immune profiling

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• hbctraining/Intro-to-ChIPseq

  Intro to ChIPseq using HPC

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• pmqs/Fix-OneDrive-Zip

  Fix OneDrive Zip files >4Gig

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• IanevskiAleksandr/sc-type

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• kharchenkolab/numbat

  Haplotype-aware CNV analysis from single-cell RNA-seq

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• single-cell-genetics/cellsnp-lite

  Efficient genotyping bi-allelic SNPs on single cells

  Language:C13089211

• TrinityCTAT/Trinity_CTAT

  11527334

• jokergoo/simplifyEnrichment

  Simplify functional enrichment results

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• YMa-lab/CARD

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• kharchenkolab/dropEst

  Pipeline for initial analysis of droplet-based single-cell RNA-seq data

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• powellgenomicslab/scPred

  scPred package for cell type prediction from scRNA-seq data

  Language:R7452816

• single-cell-genetics/cellSNP

  Pileup biallelic SNPs from single-cell and bulk RNA-seq data

  Language:Python7462211

• harbourlab/uphyloplot2

  Draw phylogenetic trees of tumor evolution

  Language:Python6702024

• gifford-lab/prescient

  Codebase for PRESCIENT (Potential eneRgy undErlying Single Cell gradIENTs) for generative modeling of single-cell time-series.

  Language:Python441486

• shiquan/PISA

  A collection of tools to process single-cell omics datasets.

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• gxiaolab/scAllele

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• Kyoko-wtnb/FUMA_scRNA_data

  Descriptions/scripts for pre-process and processed data for FUMA cell specificity analyses (scRNA-seq)

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• icnn/Microarray-Tutorials

  Practice Multi-Platform Microarray Tutorial

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• xuranw/locCSN

  A python package for calculating local cell specific networks

  Language:Python16144

• powellgenomicslab/BGI_vs_Illumina_Benchmark

  This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for single-cell RNA-sequencing" by Senabouth et al.

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• maese005/oncoPredict

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• holab-hku/DCATS

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• VCCRI/scTalk

  Intercellular communication analysis for scRNA-seq data

  Language:R6761