Puriney's Stars
ctgk/PRML
PRML algorithms implemented in Python
PatWalters/practical_cheminformatics_tutorials
Practical Cheminformatics Tutorials
MarioniLab/miloR
R package implementation of Milo for testing for differential abundance in KNN graphs
jeroen94704/klepcbgen
Generates a KiCAD schematic and PCB layout using a Keyboard Layout Editor json file as input
theislab/scib
Benchmarking analysis of data integration tools
dpeerlab/Palantir
Single cell trajectory detection
scverse/muon
muon is a multimodal omics Python framework
sunduanchen/Scissor
Scissor package
wheaton5/souporcell
Clustering scRNAseq by genotypes
raerose01/deconstructSigs
deconstructSigs
scverse/pertpy
Perturbation Analysis in the scverse ecosystem.
LiuLabUB/HMMRATAC
HMMRATAC peak caller for ATAC-seq data
theMILOlab/SPATA2
A Toolbox for Spatial Transcriptomics Analysis
MangiolaLaboratory/sccomp
Testing differences in cell type proportions from single-cell data.
philippbayer/submission_checklist
A checklist to help you avoid all those minor errors when submitting a scientific manuscript
carmonalab/STACAS
R package for semi-supervised single-cell data integration
ygidtu/trackplot
trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and full-length sequencing datasets.
SydneyBioX/scMerge
Statistical approach for removing unwanted variation from multiple single-cell datasets
jackbibby1/SCPA
R package for pathway analysis in scRNA-seq data
earmingol/cell2cell
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
VCCRI/Sierra
Discover differential transcript usage from polyA-captured single cell RNA-seq data
kharchenkolab/cacoa
Single-cell Case Control Analysis
data2intelligence/SpaCET
Spatial Cellular Estimator for Tumors
buenrostrolab/FigR
Functional Inference of Gene Regulation
aryarm/varCA
Use an ensemble of variant callers to call variants from ATAC-seq data
shuxiaoc/mario-py
MARIO: single-cell proteomic data matching and integration using both shared and distinct features
waldronlab/CNVWorkshop
Workshop for CNV analysis with Bioconductor
Ahituv-lab/Asymmetron
A tool to identify strand asymmetries in genomic data
cbg-ethz/scSomMerClock
Test for a molecular clock based on the phylogenetic tree inferred from single-cell DNA sequenzing data
euxhenh/Truffle
Trajectory Inference of clinical data via Multi-commodity Flow