chensunefu

chensunefu's Stars

• voutcn/megahit

  Ultra-fast and memory-efficient (meta-)genome assembler

  Language:C++58837333134

• mdozmorov/HiC_tools

  A collection of tools for Hi-C data analysis

  541356121

• aidenlab/juicer

  A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

  Language:Shell41017309181

• marbl/Mash

  Fast genome and metagenome distance estimation using MinHash

  Language:C++3863316591

• PacificBiosciences/pbbioconda

  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.

  2492969344

• tpoorten/dotPlotly

  Generate an interactive dot plot from mummer or minimap alignments

  Language:HTML18982353

• malonge/RaGOO

  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag

  Language:Python17068028

• nboley/idr

  IDR

  Language:Python164185945

• secastel/phaser

  phasing and Allele Specific Expression from RNA-seq

  Language:Python107107237

• adigenova/wengan

  An accurate and ultra-fast hybrid genome assembler

  Language:Perl8477714

• liangclab/HERA

  Language:Perl7632021

• shendurelab/LACHESIS

  The LACHESIS software, as described in Nature Biotechnology (http://dx.doi.org/10.1038/nbt.2727)

  Language:C++7696133

• lfaino/LoReAn

  Long Reads Annotation pipeline

  Language:Python7184610

• ArimaGenomics/mapping_pipeline

  Mapping pipeline for data generated using Arima-HiC

  Language:Perl7081622

• biocore-ntnu/epic2

  Ultraperformant reimplementation of SICER

  Language:Cython553759

• shilpagarg/WHdenovo

  Language:Python47616

• cbg-ethz/shorah

  Repo for the software suite ShoRAH (Short Reads Assembly into Haplotypes)

  Language:C++3985814

• estebanpw/chromeister

  A dotplot generator for large chromosomes

  Language:C394214

• biocore-ntnu/epic

  (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER

  Language:Python317866

• AppliedBioinformatics/runBNG

  An easy way to run BioNano genomic analysis

  Language:Shell273417

• sfu-compbio/colormap

  Language:C++166102

• wushyer/RGAAT_v2

  Add multiple thread function for genome comparison

  Language:Perl14066

• caulai/broomcorn-millet-genome-assembly

  Chromosome conformation capture resolved near complete genome assembly of broomcorn millet

  Language:Shell10103

• bioinfomaticsCSU/BOSS

  A new algorithm for scaffolding

  Language:C++9373

• Iceylee/NGS-Pacbio

  Pipelines and scripts for analysing RNA-seq，genome and other sequecing data.

  Language:C++9105

• andreamrau/coseq

  Co-Expression Analysis of Sequencing Data

  Language:R6252

• biofilos/ctdg_finder

  Language:Python5371

• skchronicles/PeakCalling

  Benchmarking ChIP-seq peak callers

  Language:Python5203

• l337x911/inphadel

  InPhaDel: (In)tegrating whole genome and proximity ligation sequencing to (Pha)se (Del)etion variants.

  Language:Python3200

• YakhiniGroup/SpectraPh

  Extending partial haplotypes to full genome haplotypes using chromosome conformation capture data, Bioinformatics 2016

  Language:C#2300