oushujun

oushujun's Stars

• ViennaRNA/ViennaRNA

  The ViennaRNA Package

  Language:C3111922778

• marbl/MashMap

  A fast approximate aligner for long DNA sequences

  Language:C++272175039

• vibansal/HapCUT2

  software tools for haplotype assembly from sequence data

  Language:C214912536

• nanoporetech/remora

  Methylation/modified base calling separated from basecalling.

  Language:Python1622019721

• marbl/ModDotPlot

  Language:Python124122110

• RagnarGrootKoerkamp/astar-pairwise-aligner

  A pairwise sequence aligner written in Rust

  Language:Rust11851711

• tolkit/telomeric-identifier

  Identify and find telomeres, or telomeric repeats in a genome.

  Language:Rust11351914

• hasindu2008/slow5tools

  Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.

  Language:C988486

• MeHelmy/princess

  Language:Python794168

• PacificBiosciences/pb-CpG-tools

  Collection of tools for the analysis of CpG data

  758626

• qjiangzhao/TEtrimmer

  TEtrimmer: a novel tool to automate manual curation of transposable elements

  Language:Python665172

• mbhall88/ssubmit

  Submit slurm sbatch jobs without a script

  Language:Rust65245

• zhangrengang/SubPhaser

  To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.

  Language:Python5544012

• fiberseq/fibertools-rs

  Tools for fiberseq data written in rust.

  Language:Rust432395

• lemene/PECAT

  PECAT, a phased error correct and assembly tool

  Language:C++432381

• WGLab/DeepMod2

  DNA 5mC methylation detection from Dorado or Guppy basecalled Oxford Nanopore reads

  Language:Jupyter Notebook384292

• bergmanlab/TELR

  TELR is a fast non-reference transposable element detector from long read sequencing data.

  Language:Python3362111

• maickrau/ribotin

  Language:C++312132

• baozg/phased-assembly-check

  28303

• bergmanlab/drosophila-transposons

  Drosophila transposable element canonical sequences

  Language:Rich Text Format2682711

• pepebonet/DeepMP

  DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data

  Language:Python26291

• baozg/Potato_C88

  Chromosome-scale and haplotype-resolved assmebly of tetraploid cultiavetd potato with polyploidy graph binning

  Language:Python24253

• Kirovez/pyTanFinder

  Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results

  Language:Python12211

• dontkme/EAHelitron

  Easy to Annotate Helitrons Unix-like command line.

  Language:Perl10180

• MariaNattestad/Nchart

  Creates an N-chart for comparing assembly lengths, including script for counting assembly lengths from a fasta file

  Language:R10205

• PengNi/ccsmethphase

  Methylatino phasing using PacBio CCS reads

  Language:Nextflow10150

• zengxiaofei/small-contig-reassignment

  To reassign small contigs after manual grouping by small contig removal, rescue & optimization

  Language:Python8403

• juan-lopez/L1PD

  Language:Shell6

• dinahafez/McEnhancer

  Source code and results for McEnhancer: Predicting gene expression via semi-supervised assignment of enhancers to target genes

  Language:Perl31

• rrazaghi/pb-mod2bed

  Convert modified base BAM to BED

  Language:Python3100