barricklab/breseq
breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++ and R.
C++GPL-2.0
Stargazers
- audy@OneCodex
- barrantesisraelUniversitätsmedizin Rostock
- bretonics@modernatx
- cccsndTianjin
- cfblaebDenmark
- CTLifeThe University of Chicago
- danieldeatherage
- dannagifford
- dawnmyGermany
- dnlrx
- druvusSweden
- flashlabWuhan
- flashton2003Blantyre, Malawi
- indexofireHZCDC
- jeffreybarrickThe University of Texas at Austin
- jrherrUniversity of Nebraska
- K-N-S
- KatrinaHarris23Pittsburgh, PA
- lyschoeningCopenhagen, Denmark
- meonoTechnical University of Denmark
- mgalardiniTwincore & MHH
- mikesshImmunosequencing Algorithms Lab
- PerugolateUniversity of St Andrews
- pvphaneufUniversity of California San Diego
- rhshah@mskcc @msk-access @mskcc-omics-workflows
- rohanmaddamsetti
- shenwei356Chongqing Medical University, China
- stevendbrownZafrens
- thejmazzBioBox Analytics Inc.
- tolot27@imb-fmg
- tseemannThe University of Melbourne
- txjeUniversity of North Carolina
- vishnubobBoston, MA
- vladimirgJerusalem
- wjideaCA
- yeemey